RNA id: TU769


Basic Information

Item Value
RNA id TU769
length 974
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G527
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2626045 ~ 2627404 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAATGAATGAAGTCAACAACGTTACTAGTATTCAAAATGTTAAGCAAGCACTGCTTTGTTTCCATTCTATATATCGGTGTTAATCTTGTATCTTTGTTCTGGTTTGTTCGAATGGTGAACGTGTACTATTGATAGCTGCTCTTCTCACGCAGGCCAAGAATGCATGTGTTTCGTTTGCCGGCGGTGTGTTCGAGCTTTTTTTTGTCCGATGCTGCCGAGGCGAGGCGACATCACCGTCAGCTTTCCTCGCTGCTAGCCGCTGGACGTCGACTGTGTGACCAGCTAAAGACCAGCTAAAGACCAGCTAAAGACCAGCTAAAGACCAGCATCCAGACACACCTCTGCTCTCCATacagggtcagagagctctcagctTTCATCAAGAACATCTTCATGTGTGTTCTGAAGaagaacaaaggtcttacacgAGGAGAGTAACGAATGATATATTTTctacttttgggtgaactatgcttttaaagcatttacaaCTGCCTTAAACTTTAAGACAAAgaactttaacatttttgtttgcaaactTTACTCATCTAGCTCCATTTGGATTTCAAGTTGACTTTTACATCTGGTCAGCCAGGCAGTGACTTCTGTGTAAGTGGGAGAGGTTTGTGCGTTTgcatatgtatgcgtgtgtgtgtgtgtgtgtgagagagagagacagtgtttgcgcatgtgtgtgttggTGATTGTCGTATCAGTCTCACACCAGAGTGTGTTTGTCCTGATTGACACACTGAGCCCTGCGTGACTCTCGCTCTGATTCCTGCTGATAAGAGTTATCACGGAGCTCGTGTCGTTGTGTAGTTTGTGCATCGGTTGTTGCTTCTAAGAAACCGGACGGAGTGCGACAACATGCCTCAGGCcACTCTTTATGATTGATAAGCTTTTGCACCCAATTTAGGTTCCACTGTGACACGAGTCccgtgagtctgtgtgtgttaccCAACAGAGTGTAt

Function

GO:

id name namespace
GO:0008544 epidermis development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU722 lncRNA upstream 19968 2603191 ~ 2606077 (+) True G486
TU760 lncRNA upstream 37037 2588687 ~ 2589008 (+) True G518
TU759 lncRNA upstream 37372 2588445 ~ 2588673 (+) True G517
TU754 lncRNA upstream 42398 2579316 ~ 2583647 (+) True G512
TU743 lncRNA upstream 83736 2540487 ~ 2542309 (+) True G505
TU785 lncRNA downstream 76118 2703522 ~ 2720923 (+) True G538
TU796 lncRNA downstream 98896 2726300 ~ 2730720 (+) True G546
TU1087 lncRNA downstream 658545 3285949 ~ 3286202 (+) True G719
TU1141 lncRNA downstream 1092860 3720264 ~ 3720539 (+) True G771
XR_006250463.1 lncRNA downstream 1392693 4020097 ~ 4024338 (+) True LOC122341420
XM_043242553.1 mRNA upstream 52068 2564546 ~ 2573977 (+) False cd247
XM_043242561.1 mRNA upstream 52068 2570172 ~ 2573977 (+) True cd247
XM_043242543.1 mRNA upstream 61626 2561357 ~ 2564419 (+) True creg1
XM_043248050.1 mRNA upstream 67518 2552759 ~ 2558527 (+) False setdb2
XM_043250987.1 mRNA downstream 20023 2647427 ~ 2654848 (+) True gpa33a
XM_043248288.1 mRNA downstream 28729 2656133 ~ 2676029 (+) True LOC122351317
XM_043248297.1 mRNA downstream 28729 2656133 ~ 2676029 (+) False LOC122351317
XM_043248309.1 mRNA downstream 28729 2656133 ~ 2676029 (+) False LOC122351317
XM_043248316.1 mRNA downstream 28729 2656133 ~ 2676029 (+) False LOC122351317
TU717 other upstream 29743 2594931 ~ 2596302 (+) True G482
TU696 other upstream 98801 2524525 ~ 2527244 (+) True G474
TU718 other upstream 112186 2511721 ~ 2513859 (+) False pcid2
TU731 other upstream 140057 2483673 ~ 2485988 (+) False grtp1a
TU616 other upstream 433581 2185859 ~ 2192464 (+) True cyyr1
XR_006252051.1 other downstream 114675 2742079 ~ 2742212 (+) True LOC122353699
TU1095 other downstream 707254 3334658 ~ 3340876 (+) True G727
TU1118 other downstream 1009303 3636707 ~ 3699093 (+) True G749
TU1197 other downstream 1729294 4356698 ~ 4357260 (+) True G824
TU1199 other downstream 1730603 4358007 ~ 4358296 (+) True G826

Expression Profile