RNA id: XM_043248050.1


Basic Information

Item Value
RNA id XM_043248050.1
length 2066
RNA type mRNA
GC content 0.58
exon number 12
gene id setdb2
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2493572 ~ 2558527 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttgattCGGACACAGGCGGATGGCTCTTTTTTTGACGCCGCGTTATTTCATTCACTCCGGTGAAGTCGTTTAAGTATTATATTTGAGTAAGTTTTAAAAGTACTTCAGTGATGTTTGTTATAATCGGCATATAACGTTTCTGAGCAGAGTTTCTGTGAGAAACTGAGCAGTTGTTTGACGTTCGTCgagtgtttgtttgatttctgAAGCTCGCAGCGAGATGACGGAGTTTATCACcgAGCAAGCCCGAGAATTCTGGGAGAACGTGGATGTTGAGGAAGTGTTTGATGACCTTCTGGACAGACTTAATCAATTAAGATACTCCATCACACACAACACTGCTACTGACagagATTATGTTCAGGCCATGAAGATCGTTCTGGAGTCGGAGCTCAGGAGCGAAGGCATCCAGGAGGTGCTGATTAATGAAGAGATCCTGAAGGTGACCGTATCAGAGTCCCAGTGTTCTCCGGAGAACCCGAGGAACGGAGTGGAGACGGACAGCTCACGGCTCTGCAGGGACGGCGAGTCGAGCTCCGATCACAGCCAGACGTCTGCAGCGGGTCGAGCCGAGCTTCTGCGCTCTCCTCTGAGCTTCTGCTCTGAAGAGCCCAGGTCTCCGGTGCATCTGGTCTATCATCCTCACGACTGCAGCTGCGCATGCGTCCCGCGGCTGGCCGACCACGCTGACCGCTTCCTGGGTCACAACCCTCTGAGAGCGCCCATGCTGTGCTGCTTCCAGCGCCACTGCGAGCCGGACGCCTCGGACGCCGCCGTGCTTTATAAAGCGCCGTGTGGACGGAGCCTGCGCTCGCTGGACGAGGTTCTGGAGTTCCTGCTGCAGTCGGAGAGCCTCGGCGTGCTGCATCCGGACAACTTCAGCTTCGACCCGCAGGTCTCTCCAGAGAACCAGGCGCGAGCTCCGTCCTCGTCTGCGCCGCTGTTCGAGCGCGACCTCAGCCGCGGGATCGAGCCGATTCACGTCTCTCTGTTCAACGAGCTGGACGGGACTCGGCCCAAAGACTTCCGCTACAGGAAAGAGCGCTGGCCGCACGGCTGCTTCCTGAGCGCCGCTCCGCTCTTCACCGTGTGCTGCGACTGCACCGACGGCTGCGCAGACGCCCGGAGCTGCGCTTGCGTTCAGCAGACGCTCAGAAGAGCCGGAGAGCAGCAGGCGTACACACACCAGAGACTGAGAGCGCCCCTGAGAGCCGGGGTGTTGGAGTGCGGGCCGTGGTGCGGCTGTCCGAGGAGCCGCTGTCAGAACCGCGTGGTTCAGAAGGGTCTTCGCGTCCGGCTGCAGGTGTTTCGTACGATGGACCGCGGCTGGGCCGTTCGCTGCAGAGACGACCTCGACAAGGGGACCTTCGTCTGCATCTACGCAGGCGTGGTTCTCCGTCAGCAGCAGAGCGTGGAGGAGCCGACGGATGGAGAGCCGGTCGTGTCTGATGACGaggtggaggtggtggaggagtGGACGCTGCCCTCAGGACCCACGGAGACGGTCAGCGAGCCGCTGGACTGCTCTCCACCGCTGTATGTGCCCGTGATCCAGAGACCCTCCGATCAGAGTCCACTCGCTTCGCTCAAGGATCAGCAGCAGCTGAGCGTCTCGTCTCTGGACTGCAGTGAGAACGGGACCGAGGCGTGTGAGGAGGTCGCCAGTAAGAAGCCCAGACTGACCGAATCGAACGGACACGGCGTTGAGATCAGCACACACTCgctgcacagacacacacacacacacacacacacacacgagcagcTCTACTACCTGGACGCTTCCAAAGAGGGCAACGTCGCCCGCTTCTTCAACCACAGCTGTGAGCCGAACCTCTTCGTCCAGAGCGTCTTCACGGACACACACGACCCTCAGTTCCCGCTCATCGCCTTCTTCACGAGCAGGTCCGTTAAAGCAGGAACTGAACTGAcctggaacaggaagtgagCGTGATCATGTGACTCGTCTGATTGAAACTCTGCTAAAGCTCCAGAGAAACCACGAAGGGTCCGTCTGGTTCATACTGTAATGACTGCAAAGACTtcattaaaagtgtaaaaatca

Function

GO:

id name namespace
GO:0007059 chromosome segregation biological_process
GO:0051567 histone H3-K9 methylation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0018022 peptidyl-lysine methylation biological_process
GO:0001947 heart looping biological_process
GO:0070986 left/right axis specification biological_process
GO:0005634 nucleus cellular_component
GO:0005488 binding molecular_function
GO:0046974 histone methyltransferase activity (H3-K9 specific) molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU743 lncRNA upstream 10450 2540487 ~ 2542309 (+) True G505
TU741 lncRNA upstream 12358 2539233 ~ 2540401 (+) False G504
TU742 lncRNA upstream 12358 2539233 ~ 2540401 (+) True G504
TU706 lncRNA upstream 37253 2514988 ~ 2515506 (+) False pcid2
TU708 lncRNA upstream 53739 2493572 ~ 2499020 (+) False setdb2
TU754 lncRNA downstream 20789 2579316 ~ 2583647 (+) True G512
TU759 lncRNA downstream 29918 2588445 ~ 2588673 (+) True G517
TU760 lncRNA downstream 30160 2588687 ~ 2589008 (+) True G518
TU722 lncRNA downstream 44664 2603191 ~ 2606077 (+) True G486
TU769 lncRNA downstream 67518 2626045 ~ 2627404 (+) True G527
XM_043236065.1 mRNA upstream 34374 2511572 ~ 2518385 (+) True pcid2
XM_043246029.1 mRNA upstream 63656 2483640 ~ 2489103 (+) True grtp1a
XM_043238321.1 mRNA upstream 71200 2469473 ~ 2481559 (+) True adprhl1
XM_043238312.1 mRNA upstream 71200 2470319 ~ 2481559 (+) False adprhl1
XM_043238329.1 mRNA upstream 75259 2470483 ~ 2477500 (+) False adprhl1
XM_043242543.1 mRNA downstream 2830 2561357 ~ 2564419 (+) True creg1
XM_043242553.1 mRNA downstream 6019 2564546 ~ 2573977 (+) False cd247
XM_043242561.1 mRNA downstream 11645 2570172 ~ 2573977 (+) True cd247
XM_043250987.1 mRNA downstream 88900 2647427 ~ 2654848 (+) True gpa33a
XM_043248288.1 mRNA downstream 97606 2656133 ~ 2676029 (+) True LOC122351317
TU696 other upstream 25515 2524525 ~ 2527244 (+) True G474
TU718 other upstream 38900 2511721 ~ 2513859 (+) False pcid2
TU731 other upstream 66771 2483673 ~ 2485988 (+) False grtp1a
TU616 other upstream 360295 2185859 ~ 2192464 (+) True cyyr1
TU311 other upstream 1111093 1439073 ~ 1441666 (+) True LOC122327253
TU717 other downstream 36404 2594931 ~ 2596302 (+) True G482
XR_006252051.1 other downstream 183552 2742079 ~ 2742212 (+) True LOC122353699
TU1095 other downstream 776131 3334658 ~ 3340876 (+) True G727
TU1118 other downstream 1078180 3636707 ~ 3699093 (+) True G749
TU1197 other downstream 1798171 4356698 ~ 4357260 (+) True G824

Expression Profile