RNA id: XM_043248288.1


Basic Information

Item Value
RNA id XM_043248288.1
length 4208
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC122351317
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2656133 ~ 2676029 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCGCGCAGACCCGTTACTTTCGACGCGGAGAAGAAACATGAAGAACACGAAGAGAAAACCACGAGAGAAACACGACAGAGATTCCGCGATGGCTCTCAGAAGCGAGCGCTTTAACGCGCTTTCTCTCCTCAGATGCTGGATCTCGATCTTGGGCTTCACAGCGGTGTCGGTGTGTGAGGCCGTGCAGGTGTCTGTCCGTGACGAGCGGCGCTTCGCGATGCTCTTCCAAGCCGTGGTTCTTCCGTGTCACTACAGCAGCGTCTCGTCTCAGACTCCGGTCATCCAGTGGTGGTACAAGTCTTACTGCCGGGATCGGAGCCGAGACGCCTTCCGCTTCCCCGACACGTTGGCGATCCACGGCTCCGAGCTCGGCTCCTCCGTTCATCTGGACTGTGGGGACAGCGGCCGGACGGTGCGCATCGTGGCGTCTGGTCAGGGCTCGTCCATCACGCTCGCCGAGCACTATAAGGGCCGGGACATCTCCATCATCAACAaggcCGACCTGCGCATCGGTGAGCTGCAGTGGGGAGACAGTGGTGTTTATTACTGTAAGGTGGTGATCTCTGATGATCTGGAGGGACAGAATGAAGCACACGTGGAGCTGCTGGTGCTGGGTCAGACAGATTTGGCCGATGATCTTCTGCCTGGGTTTAATGTGGAGATTGTTCCAGaGTGGGTGTTTGTGAGTGCTGTGCTCGTGGGCAGTCTGCTGGTCATCCTGCTGGTGGGAGTCTGCTGGTGTCAGTGCTGTCCTCATTCATGTTGCTGTTACGTAAGATGCTGCTGCTGTCCAGACACCTGCTGCTGCCCTCGGCACCTGTATGAAGCAGGGAAGGGCATCAAGTCAGTGCCGCCCACTCCTGTGTCCATGCTCCCTCCATACTACATCCCTGGGATGCCCACCATGGTGCCCATCGCTCCACCCTCCCTCATCGACCCGAGCCTGTCCGCTGCACCCTCGCTGGAAACCGGCGGCTCAGTGCGCAGTGGTTTCCATCCGCAGCCGGCATCAGATCAGAGCTCTCTGAAGGTGCTGCAGTTCGTGGAGAAGCAGCTCGCTCAGTTTAACCCATCTCAGACGCTTAGCAGCAGTCCAAACTCCTGCAGTATGTCTGAGCTGAGCTCGCTACACGATGTAGAAACCGACTTTCGCCAAACCTTTCGACAAGTCCAGAAGAAGGCTCTACCGGCCATTCCTGACCTCGATGACCCCGCTGACCTCCGAGCCACAGATTTATCTCCCGTTCACGAGGGAAGATACACTCGACAGCCACCGCACAGAAATCGAGTGGCAGATGAACGCCCGAGCTGGAAGCCTCGCTCGGAGCACCTGCAGAGGAAGACTTTCCAGGATCGAGGAAGGACTGGATCTGTGGATGAGCTGGAGGAGTTTGCCATGGAGTACATGCAGCGAGGACGACACGGTGACATCGGGAACAGGGTGGACGACTACAGAGAGCGAGAGCGGGAGCGTTCCCCATTTTATCGTCCCAAGAACAGTCCAGGGAGACGTCCCCCGAGCCCTCCGCCCTTACCTGGAAAAAACCGGGACACCTGGGGGAACGGTCAAGCCCAGTGGGATCAGAGCGGAAGAGATCGAAGGCCAGACTACGACCCTGCCATTCTCAACAGTTTACTGGAACGTAAAGCTAACGCTCCGAAGAGCGGCGCTTCAAAAACCGGACAGATGGAAGACGACTCGGACACTCCGTCCAAAAGCAGCTCCAAGAAGAGTAGTGAGCGTGTCCAGATCAGGACTCCCAGCAAACAGTCCCCTCGTCAGCGGACGGCCGAGGACAACGAGTCTCTGCCGCCGTACACAGAGAAGGAGCTGGAGCGGTCCGGCGGACAACAGCCGTTCAGATACACACGCTCCGGGCCGGAGGAGCTGAGCCGCCCGCGGAAAGTGACATTTTTCGATGAACAAAGCACGCAGTTTGATTCCGACCTAGGTCTTTCAATCACGGTTCGATTTGTACCTCGATTTGACAACAGAAAATAAGCTGAGCACAGGTAACTAGAATATCAGTAAATCAGTTCTGCTGCTTGCTGCTTCATTCCTCCCCGACATGACAAGCTCTAACACAACTAACCGTACTGAGACGTTAGGAGTCTAGAAAGAGAACATTATAAAAGACACTGCAGTATTTGCTCTGTGGATAGTTTTGGGCTCTGCGTGAGTTTAGTACGTCGATCGCTGAAGAAAATTAATCCACGATCTTCAGTTTAATACCCAGACTTCCACTACAAGATGATGTTTCTGCTTTTACAGACACAGGTACTGCTGTActttaataagaagaagaatagAAGTTCAGCAGAGACGAAAGTGTGCTGTCAGACCATTAGTCACGTCCTCAATAAAAGTTCTGTGgatgtttataatgtatttagaaacacatatttacatttatttacatgtctgtctttcatatatacatgcacgcgTGTACTTTTATACATACACATCTACacagtatacatacacattacGTCAATCACAATGAaaggtttgacagcactaataaatacagGTGGAAATCTTATGGAGTGCAACTTGAAGAATCAGGCAGCTTTTCAGggttggacttttgctttgaatttgttttgtgtgtgtgttattcattatattataacacGTCTGGTCCTAATAATTGCAGAATAATGGCTTCTCCTGCAGACTCTCAACGCTTGACGAGACTAATCTGCTCAAACTCTCAGGTTCTCTGCTTCTGCTCActcttctgtctctttctgaaCAGAGCACTCTTCTGAGCAGAGACTCGCTTGTGGTTTGATGTCTTCTTCACGCCGCGCTGAACTCGTACTGAAAGAGTTTTACTGCCACGCCGCTAAAATGCCTCACAGCTTTGACTCTGAGCATGGAGAGAGTTCACCAGAACGTTTATGATATCGAAGAAATGATGAGGTTTATGCTGAGTGTTACTGGATGTCGTTTATAAGACTAGCATACACAAAATtctgggatcagtaagatttttttaaagaggtctattctatttgatttaattttgagaaatattattatgtaaagtaacagttttctattttaatatactttaaagtgtaatttatttctgtgaagcgcagctgtattttcagcatcattactcttcagtgtcacgtgatctttcagaaatcattatcaTATTATTCTGATTCATAATCTGTGTTGAAACTGTTGTTGGTGCAAGAGATAATTTAAGGATTCATTGATaagtaaaaagtttaaaaaaagattttgatataaactactattcaaaagtggggtcagtattttatttatttccttaaaaaagaaataaataaataattttgttcagcaagcatgaattaaatgatgaaaagtgataggaaatatattaaaatatttatatttccaataaatgccattttagttttttagttttactttttaaatcatcAAAGGATCGAAGAAAAAAGGATATCACAGGTTCAAAACAatgtttcaacactgataataaatcagtatattagaaggatttctgaaggatcacgtcaAACTGAAAACTGCAAATTCAATAGGAAaccaatatttcacaatgttacagATCTTTCTGaatttgtgattaaataaattcaaccaTTAAAAGCATCTGAAACCGTACTGATCCCAAACAGCCGGGACAcggtcttcttcttcttcttcttcttctgtatAATCCTAAAGTGCTCTGAATGAATgagtttttattgtaaaaacaagACACTTGCtaactaattaatattattgcagATCTTGTTAAACACTCATGCTTTTATCAGTATTGTGAGATACAGACCATTATTGTCTAAAAAAACAAGTGatgatattgtgtttttttgggcTTGACTCTGGTTTTCATAACCCAAGCTGAGATCTAACCGTTAGATCAATAAGAGAGGGTTTTCAGTGTTAGTACTGAGAAGTATGTTCATCTGGGGTCAATAGCTTCAGTGTAAGGTGTCTGGAGGCTCTGATGAGCTCATCTGGATCTGCTGGACGCACTGCCTTTCTCTATCTGCGTCACACAAAGTCATCTTGTTCCAATACTTGAGAAAACATTTCATAGAATTACATGAGGACTGAAGATCATGTTTATGCaactgtttacattttctatgtTTTTACATGAATGGTCTGTGTGCAGACTGAATGAATTTCAGTAAAAATCTAGCAGACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU769 lncRNA upstream 28729 2626045 ~ 2627404 (+) True G527
TU722 lncRNA upstream 50056 2603191 ~ 2606077 (+) True G486
TU760 lncRNA upstream 67125 2588687 ~ 2589008 (+) True G518
TU759 lncRNA upstream 67460 2588445 ~ 2588673 (+) True G517
TU754 lncRNA upstream 72486 2579316 ~ 2583647 (+) True G512
TU785 lncRNA downstream 27493 2703522 ~ 2720923 (+) True G538
TU796 lncRNA downstream 50271 2726300 ~ 2730720 (+) True G546
TU1087 lncRNA downstream 609920 3285949 ~ 3286202 (+) True G719
TU1141 lncRNA downstream 1044235 3720264 ~ 3720539 (+) True G771
XR_006250463.1 lncRNA downstream 1344068 4020097 ~ 4024338 (+) True LOC122341420
XM_043250987.1 mRNA upstream 1285 2647427 ~ 2654848 (+) True gpa33a
XM_043242553.1 mRNA upstream 82156 2564546 ~ 2573977 (+) False cd247
XM_043242561.1 mRNA upstream 82156 2570172 ~ 2573977 (+) True cd247
XM_043242543.1 mRNA upstream 91714 2561357 ~ 2564419 (+) True creg1
XM_043248050.1 mRNA upstream 97606 2552759 ~ 2558527 (+) False setdb2
XM_043249376.1 mRNA downstream 2269 2678298 ~ 2690765 (+) True ildr1a
XM_043240364.1 mRNA downstream 15713 2691742 ~ 2700224 (+) True tmem39a
XM_043240370.1 mRNA downstream 15717 2691746 ~ 2700224 (+) False tmem39a
XM_043235163.1 mRNA downstream 63648 2739677 ~ 2742411 (+) True rpl24
XM_043224891.1 mRNA downstream 82054 2758083 ~ 2782184 (+) True LOC122328837
TU717 other upstream 59831 2594931 ~ 2596302 (+) True G482
TU696 other upstream 128889 2524525 ~ 2527244 (+) True G474
TU718 other upstream 142274 2511721 ~ 2513859 (+) False pcid2
TU731 other upstream 170145 2483673 ~ 2485988 (+) False grtp1a
TU616 other upstream 463669 2185859 ~ 2192464 (+) True cyyr1
XR_006252051.1 other downstream 66050 2742079 ~ 2742212 (+) True LOC122353699
TU1095 other downstream 658629 3334658 ~ 3340876 (+) True G727
TU1118 other downstream 960678 3636707 ~ 3699093 (+) True G749
TU1197 other downstream 1680669 4356698 ~ 4357260 (+) True G824
TU1199 other downstream 1681978 4358007 ~ 4358296 (+) True G826