abcb6a (abcb6,abcb6a,LOC107676041,LOC106574324)


Basic Information

Item Value
gene id abcb6a
gene name abcb6,abcb6a,LOC107676041,LOC106574324
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4922527 ~ 4931978 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240532.1
TGTCCCGGTGTTGTTGTGTAAGTCATGGACGGTGGAGTCGAGAGGTGTGAGTTCACGGCTGGAAGGACATACAGCAAACGCAGACGTTTAATTGATTGGGCAGCCCTAAAGTTCATCTGAGGGGATTATTCTTCAAGGACGCACGCGAAACACTAGAAGGATCTCAGCGTCGTTTGAAGAAGATATCCTCATCGTGATGGTGGAGATGAAGGGTTACTGTGAAGCGGGGGTCTCCATGCAGCAGGTCTGGCTGGAGGGCGGCCTGACTCTGTGCTTCTACTTCACCCTGGTGCCGTCCGTCCTCCTCACCCTCTCCGTCCTCTTCGGCACGTTCCTGTGCGCGTGCTACAGGCGTTACGGCACGGCCATGGAGCCCAAGTTCATTCCTCGCTCTCGACTCTACCGGCTCCAGGTGGGCCTGTCGGCGCTGCTCGTCCTGCAGGCTCTGGGATGGACGGCGTCTCGAATCGCTCGCGGCGGAGAGCTGCCGGGGTACGTGGTGGTGTACGGCTGTCTCTCCGCTCTGGGCTGGATCTGGGCCGTGGCCCTGCTGCGTCTTGAGAGGAGAAGGGTTTTGGTGCGGGACAGGACCAGAGGACACAGTACGGTGCTGTTGCTGTACTGGGCCGTAGCGTTTGCTGCCGAAAACCTGGCCTTTGTGTCGTGGATGAGCCCTCAGTGGTGGTGGACTCTGGAAACGTCCGATCagcagTTGGAGTTTGCTTTCTGGCTGGTGCGGTACTTCAGCTCAGGTTTGCTGTTCCTGTTAGGCCTCAAAGCTCCAGGCTTGCCGCGCCGTCCGTACATGCTTCTGGTCAATGAAGACGAGCGAGATGTGGAGCACGGAGCACCTCTTTTGGGTAATGCTAATGAGAATCAGTCTACATGGAAAGATTTTGGGAAGAAGGTGCGTCTGTTGGTGCCGTACATGTGGCCTAAAGGCAGTGTCCTGCTCCAGCTGCTGGTTCTGCTTTGTCTCGGGATGCTAGCAGTGGAGCGCGTCATTAATGTGTTTGTGCCCATCTACTACAAGAACATAGTGAACCAGCTGACCGATGGGAGCTCCTGGAAGACTCTGGCCACCACGGTGTGTGTTTATGGGCTCCTGAAGTTCCTTCAGGGAGGTGGCGCTGGAGCGTCAGGGTTTGTAAGTAACATGCGTTCGTTCCTGTGGATTCGAGTGCAGCAGTTCACGAACCGCGTGGTCCAGGTGCGTCTCTTCGCTCATCTGCACTCTCTGTCTCTGCGTTGGCACCTGGGTCGCCGCACAGGGGATGTCCTGAGAAGCATCGACAGAGGAACTTCATCCATCAACAGCCTGCTGAGCTACATCGTGTTCAGCATCTTCCCCACTATTGCTGACATCGTCATCGCCATTGTCTATTTCATATCCAATTTCAATGCCTGGTTTGGCCTCATAGTCTTCATTTGCATGGCTCTCTACCTCACTCTCACTATTGTCATCACTGAATGGAGAACCAAATACAGACGAGATATGAACACACAAGATAACAACGCCAAATCCAAAGCTGTGGACTCTTTATTGAACTTTGAGACGgtgaaatattacaatgcaGAGAGTTACGAAGTGGGTCGCTTTGAGGATGCCATTTTGAAATATCAGGTATCGGAGTGGAAGACCAATGCATCTCTGGCGCTCttaaatcaaacacaaaacCTCATCATCGGCTTGGGTCTGCTGACCGGATCTCTGCTCTGTGCGTACTTCGTGACAGAGGGAAAGTTTCAGGTCGGAGATTATGTGCTCTTCGGGACgtacatcatccagctctatACTCCTCTCAACTGGTTTGGAACATACTACAGAATGATCCAGAATTCTTTTATTGATATGGAAAGCATGTTCAATCTCTTCACCGAGGAAGAGGAGGTCAGGGATGATGTGAACGCAGGAAACCTCAACTACAGACAGGGAAAAGTAGAGTTTGAGAATGTCTTCTTCAGCTACACACAAGGCAAGGAGATTCTAAAAGACGTCTCTTTTACCGTACTCCCTGGACAAACAGTTGCACTTGTTGGACAGTCTGGATCAGGAAAGAGCACCATCATCCGTCTGCTTTTCCGTTTTTATGACGTTCAAGGCGGGTGTGTAAAAATAGATGGGCAAGACATCTCAAAGGTGAAGCAGTCTTCTCTGCGCGCCCACATTGGTGTCGTACCTCAAGATACCGTCCTGTTTAATGACGATATTCGACAGAACATCCGCTACGGTCGAGTTACTGCTTCTGACCAGGAGGTAGAGGAGGCTGCCATCGCTGCTGACATCCATGACAAAATCATAACCTTTCCAGAGGGCTATGACACTCAGGTGGGTGAGAGGGGGCTAAAGTTGAGCGGAGGAGAGAAGCAGAGAGTCGCCATCGCTCGCACCATCCTCAAAGCGCCACAGATCATCCTCCTCGACGAGGCCACGTCTGCTCTAGACACACAGACCGAGCGAAACATCCAGGCCTCGCTGGCTAAAGTCTGCGCCAACAGAACCACCATCGTAGTGGCACACAGACTGTCGACTGTGATTGGAGCCGACGCGATCCTTGTACTTCGTGATGGACAGATTGTGGAGAGGGGGAGGCACGAGGAGCTGTTGGCGAAGGGAGGCCTGTACTGCGACATGTGGCTCAAACAGCAGCAGGCGCAGGATTCAGACTCGGCCTCCGACACTGACACCAAAGACAGGAAATCTGAGAAACTACAGCCGCAGTCATCTACTGCAGGACACAAGGGACATTAGGCTGCGCGGGACATGCAATCAGATCTTGTTCTGTGTGCATTTTAAGCTCATccaatgctgttttttgtttaacatattagaacagtaattatttaatattagatTATTTTCACCGGTTCTTCAAAGTCACCCATGTTGCctaaggatttatttatttatggggTATTTAagtccttttttttatattcctttTGCAATtgcttttctctcatttctcttAAAGTGTATTTCTAATGCTTGATAATATAAGAGAAGACTGACAAAGTATAAAATAATTGCTCCATCCACTACTATAACTTTATGATGGCCTTTATATTGTATTGAATGTAACAGTGAGGTTATTTCAGTCAGTAGATTGATTTTCTGGTTTGTTTGTAATAGCGAACATTTTGCAACTGAATCATTGTGTATATGATCTACATCAAAacaaattgcaattttatttgatataaaagtaaatgcatatatatttctttctatACAGGTTAGGTTATAGGCAAAGAGGGGGGAATCATTTCCTCAATCgattttcatgttaatttctAATATGTTATGTGATACTTTGACTTTGTTAATGATCTTTTGGGCACTTGACAAAATTATCTTTATATAGTGTATGtgcagtaatatttatttaatgccgTACaacttcagttcagtttaaggGACGTAAGCTGACACTAAACTCAGGGGACAAGGTTGAAATGAGCCATtatgtgtgtttctgctgtACTGTGTAGATTTCCAGACATGCTTCTtgaaatagttggtgaattTGATATGCATAAAATAACTGAATCATAATAGGATAAAGtctgttaagatttttttgtatgtattttattgtgcAATAAAGGAAATGGAGGGaacatgtt

Function

symbol description
abcb6a Predicted to enable ABC-type heme transporter activity and heme binding activity. Acts upstream of or within iris morphogenesis and melanocyte proliferation. Predicted to be located in membrane. Predicted to be active in vacuolar membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in dyschromatosis universalis hereditaria. Orthologous to human ABCB6 (ATP binding cassette subfamily B member 6 (Langereis blood group)).
abcb6 Enables several functions, including ABC-type heme transporter activity; ATP binding activity; and heme binding activity. Involved in several processes, including cellular detoxification of cadmium ion; melanosome assembly; and porphyrin-containing compound metabolic process. Located in several cellular components, including Golgi apparatus; bounding membrane of organelle; and extracellular exosome. Is integral component of mitochondrial outer membrane. Implicated in dyschromatosis universalis hereditaria.

NR:

description
ATP-binding cassette sub-family B member 6, mitochondrial-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0061072 iris morphogenesis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K05661 ABCB6; ATP-binding cassette, subfamily B (MDR/TAP), member 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240532.1 True 3627 mRNA 0.47 20 4922527 4931978

Neighbor

gene id symbol gene type direction distance location
LOC122346006 cpo,LOC107556274,LOC108440461 coding upstream 258017 4659870 ~ 4664510 (+)
LOC122346016 cpo,LOC107556274,LOC108440461 coding upstream 264635 4652632 ~ 4657892 (+)
LOC122346000 cpo,LOC107556274,LOC108440461,LOC108258336 coding upstream 273160 4644934 ~ 4649367 (+)
atic atic,LOC107556291,LOC107750210,LOC107674004,LOC107549437,LOC107750055,LOC107676052 coding upstream 325450 4590031 ~ 4597077 (+)
stk16 stk16,LOC107674016,LOC107750290,LOC107676064 coding upstream 360817 4555505 ~ 4561710 (+)
cnppd1 cnppd1,LOC107706838,LOC107676054,LOC107750058,LOC107549439,LOC107556284 coding downstream 477 4932455 ~ 4937679 (+)
retreg2 fam134a,LOC107706836,LOC107676053,LOC107556270,LOC107750069,LOC107673992 coding downstream 13861 4945839 ~ 4955043 (+)
fastkd2 LOC107673994 coding downstream 28346 4960324 ~ 4966920 (+)
si:ch211-93g23.2 si:ch211-93g23.2,LOC107725372,LOC107674017,LOC107556277 coding downstream 213930 5145908 ~ 5148890 (+)
ube2f ube2f,LOC107725407,LOC107556276,LOC107674019,LOC107707607,LOC107566887 coding downstream 217050 5149028 ~ 5156356 (+)
LOC122346140 NA non-coding upstream 3732 4896504 ~ 4918795 (+)
LOC122346166 NA non-coding upstream 294609 4624047 ~ 4627918 (+)
G853 NA non-coding upstream 302798 4619243 ~ 4619729 (+)
G872 NA non-coding upstream 305588 4616118 ~ 4616939 (+)
G870 NA non-coding upstream 307125 4614818 ~ 4615402 (+)
G948 NA non-coding downstream 45444 4977422 ~ 4977914 (+)
G1016 NA non-coding downstream 106742 5038720 ~ 5101322 (+)
LOC122346173 NA non-coding downstream 195512 5127490 ~ 5138854 (+)
G1036 NA non-coding downstream 224744 5156722 ~ 5156981 (+)
LOC122344626 NA non-coding downstream 472634 5404612 ~ 5408298 (+)
G826 NA other upstream 564231 4358007 ~ 4358296 (+)
G824 NA other upstream 565267 4356698 ~ 4357260 (+)
G749 LOC107730401,LOC107558902,LOC107677853,LOC107698126,LOC107561275,LOC107737038,LOC108411062 other upstream 1223434 3636707 ~ 3699093 (+)
G727 NA other upstream 1581651 3334658 ~ 3340876 (+)
G482 dusp27 other upstream 2326225 2594931 ~ 2596302 (+)
prkag3a prkag3a,LOC107750059,LOC107673997,LOC107676055 other downstream 6203 4938181 ~ 4944841 (+)
gtf3c3 gtf3c3,LOC107706835,LOC107750061 other downstream 35208 4967186 ~ 4977263 (+)
hecw2b hecw2,LOC107674007,LOC107676038,LOC108258347,LOC107706834 other downstream 47147 4979125 ~ 5025914 (+)
G1168 LOC107725347,LOC107565259,LOC107701771 other downstream 947482 5879460 ~ 5881134 (+)
G1183 actb,actb1,LOC102799139,LOC107581721,LOC103039558 other downstream 1125426 6057404 ~ 6087655 (+)

Expression


Co-expression Network