Fish Single-cell RNA Database

CELL TYPE: Granule cells

Distribution of Granule cells in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000006029	lta4h	4: 7653607 ~ 7673165 (-)
ENSDARG00000105744	ptprr	4: 74226447 ~ 74271898 (+)
ENSDARG00000078619	pnp5a	7: 6652967 ~ 6668424 (+)
ENSDARG00000102221	NA	7: 18993828 ~ 19003504 (-)
ENSDARG00000102435	plekhf1	7: 45975537 ~ 45976956 (+)
ENSDARG00000105530	si:dkey-19b23.14	7: 20512419 ~ 20515427 (+)
ENSDARG00000032631	ltb4r	7: 5016717 ~ 5039562 (-)
ENSDARG00000010423	npsn	7: 38653481 ~ 38659477 (-)
ENSDARG00000035018	thy1	5: 29794058 ~ 29803293 (+)
ENSDARG00000033735	ncf1	5: 61432541 ~ 61445697 (-)
ENSDARG00000104118	antxr2a	5: 39386225 ~ 39474235 (-)
ENSDARG00000105068	NA	3: 36424055 ~ 36425851 (+)
ENSDARG00000098570	si:ch211-8c17.2	3: 12828824 ~ 12832519 (+)
ENSDARG00000088283	si:ch73-248e21.5	3: 32607780 ~ 32611833 (-)
ENSDARG00000038010	rac2	3: 29510818 ~ 29544039 (+)
ENSDARG00000075261	timp2b	3: 57632965 ~ 57666996 (-)
ENSDARG00000063295	myh9a	6: 7735806 ~ 7776612 (-)
ENSDARG00000103207	rab11fip4b	6: 18418651 ~ 18440636 (+)
ENSDARG00000098787	cd7al	6: 18594977 ~ 18601304 (-)
ENSDARG00000103900	sept9b	6: 18935815 ~ 19035749 (-)
ENSDARG00000009677	dlg1	6: 29860776 ~ 30082922 (+)
ENSDARG00000058348	scinlb	2: 10396579 ~ 10450784 (-)
ENSDARG00000053836	si:ch211-284o19.8	2: 37851124 ~ 37864665 (-)
ENSDARG00000021200	nebl	2: 21076585 ~ 21082695 (-)
ENSDARG00000010384	lpar5a	2: 48282590 ~ 48284160 (+)
ENSDARG00000104077	fcer1gl	2: 58077662 ~ 58085444 (-)
ENSDARG00000101479	BX908782.2	2: 51765179 ~ 51772438 (-)
ENSDARG00000098730	en1b	1: 7679328 ~ 7683372 (+)
ENSDARG00000077975	si:ch73-343l4.8	1: 55891376 ~ 55896332 (-)
ENSDARG00000010317	gpr183a	9: 31105389 ~ 31108285 (-)
ENSDARG00000015554	zic2a	9: 31282161 ~ 31287010 (+)
ENSDARG00000016022	zic5	9: 31274108 ~ 31314324 (-)
ENSDARG00000019566	neurod1	9: 44291721 ~ 44295071 (-)
ENSDARG00000099014	fxyd1	16: 45202602 ~ 45225520 (-)
ENSDARG00000000906	skap2	16: 20934353 ~ 20977706 (+)
ENSDARG00000104474	il6r	16: 22177254 ~ 22194400 (-)
ENSDARG00000114387	CU499336.2	16: 36095663 ~ 36099492 (-)
ENSDARG00000026350	wasb	8: 23560183 ~ 23578660 (-)
ENSDARG00000042816	mmp9	8: 24281512 ~ 24295947 (+)
ENSDARG00000015657	zgc:77112	8: 52442622 ~ 52447101 (+)
ENSDARG00000058117	snap25b	17: 12297984 ~ 12389259 (-)
ENSDARG00000097478	qkia	17: 27723490 ~ 27814135 (+)
ENSDARG00000033227	lect2l	14: 36885524 ~ 36887063 (+)
ENSDARG00000104181	tmsb1	14: 12066695 ~ 12071679 (-)
ENSDARG00000076667	ccng1	14: 22129096 ~ 22140213 (+)
ENSDARG00000019236	gsr	14: 38852969 ~ 38873145 (-)
ENSDARG00000012972	cfl1l	13: 33606739 ~ 33609427 (+)
ENSDARG00000001452	adam8a	13: 24671481 ~ 24679636 (+)
ENSDARG00000041078	chka	18: 21122818 ~ 21145374 (+)
ENSDARG00000016854	neurod2	12: 14920088 ~ 14922955 (-)
ENSDARG00000077337	si:ch211-171h4.5	19: 10454305 ~ 10478229 (-)
ENSDARG00000078547	si:ch211-264f5.2	19: 5659526 ~ 5669122 (-)
ENSDARG00000099793	cspg5b	19: 19278082 ~ 19339337 (-)
ENSDARG00000075664	si:ch1073-429i10.1	15: 47867133 ~ 47874950 (-)
ENSDARG00000086337	si:dkey-102g19.3	21: 4702773 ~ 4707754 (+)
ENSDARG00000038728	ch25hl2	21: 7900107 ~ 7901424 (+)
ENSDARG00000093124	scpp8	10: 15106808 ~ 15111334 (+)
ENSDARG00000019521	mpx	10: 7778870 ~ 7785945 (-)
ENSDARG00000054755	alox5ap	10: 36458563 ~ 36463715 (+)
ENSDARG00000098700	il1b	10: 44955106 ~ 44964776 (+)
ENSDARG00000088219	zmp:0000000924	10: 23511816 ~ 23519898 (+)
ENSDARG00000057789	lyz	24: 24035863 ~ 24038800 (-)
ENSDARG00000013310	map3k15	24: 25913162 ~ 25989500 (+)
ENSDARG00000015567	zic1	24: 4970580 ~ 4973765 (-)
ENSDARG00000101096	cebp1	24: 40820699 ~ 40830494 (-)
ENSDARG00000004647	spice1	24: 21330753 ~ 21343982 (-)
ENSDARG00000062420	nfia	22: 16839467 ~ 17052381 (-)
ENSDARG00000021339	cpa5	25: 18459924 ~ 18470695 (-)
ENSDARG00000101621	CABZ01040054.1	KN150636.1: 2551 ~ 13087 (+)
--	unm-sa1614	--
--	mmp13a.1	--

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Granule cells.

Detail Marker Information in Datasets

Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
PRJNA554650 (6.5dpf)	Danio rerio	brain	14	Granule cells	baseline	6.5dpf, whole brain of nr1d1:VNP fish	ENSDARG00000097478 (qkia)	marker	DOI:10.1038/nbt.4103
PRJNA415636 (heart, blood)	Danio rerio	heart, blood	14	Granule cells	baseline	adult, Zebrabow M, heart and blood	ENSDARG00000057789 (lyz)	marker	DOI:10.1038/nbt.4124
PRJNA415636 (heart, blood)	Danio rerio	heart, blood	14	Granule cells	baseline	adult, Zebrabow M, heart and blood	ENSDARG00000033227 (lect2l)	marker	DOI:10.1038/nbt.4124
PRJNA415636 (heart, blood)	Danio rerio	heart, blood	14	Granule cells	baseline	adult, Zebrabow M, heart and blood	ENSDARG00000101479 (BX908782.2)	marker	DOI:10.1038/nbt.4124
PRJNA415636 (heart, blood)	Danio rerio	heart, blood	14	Granule cells	baseline	adult, Zebrabow M, heart and blood	ENSDARG00000010423 (npsn)	marker	DOI:10.1038/nbt.4124
PRJNA415636 (heart, blood)	Danio rerio	heart, blood	14	Granule cells	baseline	adult, Zebrabow M, heart and blood	ENSDARG00000093124 (scpp8)	marker	DOI:10.1038/nbt.4124

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Granule cells

Distribution of Granule cells in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

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