Fish Single-cell RNA Database

CELL TYPE: Hyp

Distribution of Hyp in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000027249	btg1	4: 16536173 ~ 16545085 (-)
ENSDARG00000018817	bdnf	7: 31924983 ~ 31941670 (-)
ENSDARG00000069425	hsbp1a	7: 26629084 ~ 26634061 (+)
ENSDARG00000103211	si:dkey-19b23.8	7: 20600674 ~ 20611039 (-)
ENSDARG00000102051	mtbl	7: 29148714 ~ 29149228 (+)
ENSDARG00000036505	syt4	7: 23907692 ~ 23916118 (+)
ENSDARG00000105529	vgf	7: 26224211 ~ 26230166 (+)
ENSDARG00000087616	maptb	3: 22158024 ~ 22216771 (-)
ENSDARG00000094836	si:ch211-195b15.8	3: 32403758 ~ 32407192 (+)
ENSDARG00000056481	vat1	3: 19914332 ~ 19971774 (+)
ENSDARG00000032619	tob1a	3: 18185616 ~ 18189283 (-)
ENSDARG00000052222	rasd2	3: 50175166 ~ 50177658 (-)
ENSDARG00000044278	synpr	6: 41223204 ~ 41229787 (-)
ENSDARG00000071011	cdk5r2a	6: 13742899 ~ 13744681 (+)
ENSDARG00000038574	scg2b	2: 47581997 ~ 47585197 (+)
ENSDARG00000013576	gadd45bb	2: 36939749 ~ 36941988 (+)
ENSDARG00000053358	basp1	2: 42724404 ~ 42748657 (+)
ENSDARG00000017860	rgs5b	2: 6885852 ~ 6889119 (+)
ENSDARG00000056262	slc35g2a	2: 24990398 ~ 24996441 (-)
ENSDARG00000027740	adcyap1b	2: 31296644 ~ 31302619 (-)
ENSDARG00000025855	camk2n1a	2: 44943396 ~ 44946094 (-)
ENSDARG00000023181	pcp4l1	2: 37995176 ~ 38000276 (-)
ENSDARG00000026871	uchl1	1: 22647756 ~ 22652424 (-)
ENSDARG00000076833	atp1b1b	1: 10720294 ~ 10739221 (+)
ENSDARG00000025034	syngr3b	1: 8415983 ~ 8428761 (-)
ENSDARG00000017174	dlx2b	1: 30977936 ~ 30979707 (-)
ENSDARG00000070266	spock3	1: 20635190 ~ 20706296 (+)
ENSDARG00000068691	kctd4	9: 18876036 ~ 18877597 (-)
ENSDARG00000079964	dlx2a	9: 3397407 ~ 3400729 (-)
ENSDARG00000013125	dlx1a	9: 3388099 ~ 3390109 (+)
ENSDARG00000070688	ncalda	16: 9833256 ~ 9897769 (-)
ENSDARG00000097528	si:dkey-7j14.5	16: 43014417 ~ 43026273 (-)
ENSDARG00000045131	id4	16: 9977858 ~ 9980402 (-)
ENSDARG00000033234	stmn2a	16: 16165029 ~ 16182319 (-)
ENSDARG00000039914	gapdhs	16: 45044642 ~ 45069882 (-)
ENSDARG00000030106	stmn4	20: 34773646 ~ 34868814 (-)
ENSDARG00000020609	snap25a	20: 34913069 ~ 34956230 (+)
ENSDARG00000031683	fosab	20: 46552311 ~ 46554440 (-)
ENSDARG00000034187	calm1b	20: 16743056 ~ 16775258 (+)
ENSDARG00000019130	plk2b	8: 17078692 ~ 17086195 (+)
ENSDARG00000003998	phyhipla	17: 20963477 ~ 20979077 (-)
ENSDARG00000053475	ngb	17: 44961908 ~ 44968407 (-)
ENSDARG00000009949	fndc4b	17: 5846202 ~ 5928942 (+)
ENSDARG00000104181	tmsb1	14: 12066695 ~ 12071679 (-)
ENSDARG00000055752	npas4a	14: 30636955 ~ 30642819 (-)
ENSDARG00000092970	tmsb2	14: 34486629 ~ 34488993 (+)
ENSDARG00000057881	si:dkey-33c12.3	13: 9313777 ~ 9318891 (-)
ENSDARG00000006497	rtn1a	13: 31424586 ~ 31470439 (-)
ENSDARG00000055751	fosb	18: 36769758 ~ 36774965 (+)
ENSDARG00000099730	pkma	18: 907266 ~ 951570 (+)
ENSDARG00000057296	cbln1	18: 18104235 ~ 18110032 (+)
ENSDARG00000112256	rpp25b	18: 783936 ~ 791639 (+)
ENSDARG00000034168	serpini1	18: 5137241 ~ 5170417 (+)
ENSDARG00000014907	htra1b	12: 11388724 ~ 11457625 (-)
ENSDARG00000019274	rasd1	12: 1398404 ~ 1400009 (+)
ENSDARG00000035832	pyyb	12: 10304435 ~ 10315039 (-)
ENSDARG00000031283	vamp1	19: 9460432 ~ 9472935 (-)
ENSDARG00000011870	sp8a	19: 2315208 ~ 2318391 (-)
ENSDARG00000042296	dlx5a	19: 41470216 ~ 41472228 (-)
ENSDARG00000077045	scg5	19: 47523730 ~ 47527192 (-)
ENSDARG00000014490	tac1	19: 25649626 ~ 25653185 (+)
ENSDARG00000071658	ywhag2	15: 15348490 ~ 15357178 (-)
ENSDARG00000019160	sh3bp5la	15: 34854025 ~ 34866219 (-)
ENSDARG00000069790	dynll2a	15: 16066091 ~ 16070731 (-)
ENSDARG00000099744	gap43	15: 47161917 ~ 47176151 (+)
ENSDARG00000031649	cort	23: 28731379 ~ 28732313 (+)
ENSDARG00000000796	nr4a1	23: 32149269 ~ 32194397 (-)
ENSDARG00000010052	ndrg3b	23: 14829468 ~ 14990921 (-)
ENSDARG00000022456	eno1a	23: 22656477 ~ 22678882 (+)
ENSDARG00000102975	nsg2	21: 41256771 ~ 41305748 (-)
ENSDARG00000005172	dynll2b	21: 39557433 ~ 39566854 (-)
ENSDARG00000019702	aldocb	21: 39608637 ~ 39639954 (-)
ENSDARG00000074057	calm3b	21: 26726936 ~ 26732085 (+)
ENSDARG00000027744	gadd45ba	11: 6456146 ~ 6457748 (+)
ENSDARG00000070919	cpne5b	11: 3005536 ~ 3195882 (+)
ENSDARG00000100170	pam	10: 5689510 ~ 5787286 (+)
ENSDARG00000114063	parm1	10: 15064433 ~ 15076420 (+)
ENSDARG00000043465	atp6v1b2	10: 19554604 ~ 19566474 (+)
ENSDARG00000034528	chodl	24: 24014880 ~ 24028235 (+)
ENSDARG00000011640	syt5b	24: 7686464 ~ 7699356 (-)
ENSDARG00000045230	cox6b1	24: 39606053 ~ 39610585 (-)
ENSDARG00000022045	map1ab	25: 19356587 ~ 19433244 (-)
ENSDARG00000103002	nptna	25: 29315924 ~ 29363934 (-)
ENSGACG00000020611	NA	groupVII: 21387177 ~ 21389660 (-)
ENSGACG00000004691	islr2	groupXIX: 6319533 ~ 6321650 (+)
ENSGACG00000004914	dlx2b	groupXVI: 10179666 ~ 10181179 (+)
ENSGACG00000004931	dlx1a	groupXVI: 10187375 ~ 10188908 (-)
ENSGACG00000011301	nkx2.1	groupXV: 10933161 ~ 10935026 (+)
ENSGACG00000006780	dlx6a	groupX: 9481735 ~ 9483945 (+)
ENSGACG00000006792	dlx5a	groupX: 9487805 ~ 9489427 (-)
ENSGACG00000006379	slc32a1	groupXVII: 4976578 ~ 4979516 (-)

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Hyp.

Detail Marker Information in Datasets

Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
PRJNA554650 (6.5dpf)	Danio rerio	brain	3	Hyp	baseline	6.5dpf, whole brain of nr1d1:VNP fish	ENSDARG00000068691 (kctd4)	marker	DOI:10.1038/nbt.4103
PRJNA554650 (6.5dpf)	Danio rerio	brain	20	Hyp	baseline	6.5dpf, whole brain of nr1d1:VNP fish	ENSDARG00000035832 (pyyb)	marker	DOI:10.1038/nbt.4103
PRJNA554650 (6.5dpf)	Danio rerio	brain	20	Hyp	baseline	6.5dpf, whole brain of nr1d1:VNP fish	ENSDARG00000023181 (pcp4l1)	marker	DOI:10.1038/nbt.4103
PRJNA554650 (6.5dpf)	Danio rerio	brain	20	Hyp	baseline	6.5dpf, whole brain of nr1d1:VNP fish	ENSDARG00000017174 (dlx2b)	marker	DOI:10.1038/nbt.4103
PRJNA797645	Gasterosteus aculeatus	embryo	20	Hyp	baseline	70 hpf, whole embryo, untreatment	ENSGACG00000004914 (dlx2b)	marker	DOI:10.1038/nbt.4103

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Hyp

Distribution of Hyp in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences