Fish Single-cell RNA Database

CELL TYPE: Nascent neurons

Distribution of Nascent neurons in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000088181	mpped1	4: 8849816 ~ 8903240 (-)
ENSDARG00000056722	cd99l2	7: 25878553 ~ 25895472 (-)
ENSDARG00000056725	hmgb3a	7: 25913225 ~ 25918281 (+)
ENSDARG00000015314	zc4h2	5: 22073710 ~ 22082918 (-)
ENSDARG00000015128	rpl27	3: 29893966 ~ 29899230 (-)
ENSDARG00000010160	rps15a	3: 26345732 ~ 26351656 (+)
ENSDARG00000013307	rpl19	3: 16229911 ~ 16232442 (+)
ENSDARG00000104436	zgc:153426	3: 49559261 ~ 49566364 (-)
ENSDARG00000104361	barhl2	6: 24817852 ~ 24821681 (+)
ENSDARG00000059775	slc32a1	6: 60142619 ~ 60147517 (-)
ENSDARG00000078416	zeb2b	6: 840434 ~ 957906 (-)
ENSDARG00000101766	ptmab	2: 5131964 ~ 5135125 (-)
ENSDARG00000020794	neurod6b	2: 50608099 ~ 50629155 (+)
ENSDARG00000099104	rpl24	1: 6408 ~ 12027 (-)
ENSDARG00000015266	mab21l2	1: 24076243 ~ 24078099 (+)
ENSDARG00000031894	lef1	1: 49814461 ~ 49905357 (+)
ENSDARG00000092693	tpt1	1: 34707932 ~ 34713868 (-)
ENSDARG00000004712	tbr1b	9: 51427826 ~ 51436377 (-)
ENSDARG00000079964	dlx2a	9: 3397407 ~ 3400729 (-)
ENSDARG00000029533	rpl18	16: 16969086 ~ 16991808 (+)
ENSDARG00000009823	pou3f1	16: 33593116 ~ 33595985 (+)
ENSDARG00000037997	tubb5	16: 10318893 ~ 10327620 (+)
ENSDARG00000099572	hmgn2	16: 51180938 ~ 51184126 (+)
ENSDARG00000040123	zfpm2a	16: 43818896 ~ 44127387 (-)
ENSDARG00000030602	rps19	16: 24188114 ~ 24195361 (-)
ENSDARG00000029150	hsp90ab1	20: 51197758 ~ 51213829 (+)
ENSDARG00000004757	ybx1	8: 47143829 ~ 47152086 (-)
ENSDARG00000009212	ppiaa	8: 45754871 ~ 45760087 (-)
ENSDARG00000008803	marcksb	17: 15534815 ~ 15539701 (+)
ENSDARG00000087636	hmgn6	14: 9421510 ~ 9428248 (+)
ENSDARG00000056119	eef1g	14: 26719691 ~ 26729289 (+)
ENSDARG00000020417	emx3	14: 26363537 ~ 26377044 (-)
ENSDARG00000052856	khdrbs1a	13: 45009957 ~ 45022527 (-)
ENSDARG00000028228	zbtb18	13: 11436130 ~ 11445034 (+)
ENSDARG00000007753	cpne2	18: 17660158 ~ 17704546 (+)
ENSDARG00000070959	si:ch211-288g17.3	19: 9455218 ~ 9460322 (+)
ENSDARG00000023298	rps27.1	19: 8743260 ~ 8748571 (-)
ENSDARG00000042296	dlx5a	19: 41470216 ~ 41472228 (-)
ENSDARG00000103791	nme2b.1	19: 48117388 ~ 48120285 (+)
ENSDARG00000006640	eomesa	19: 860830 ~ 874888 (-)
ENSDARG00000030479	hmgb1b	15: 31513065 ~ 31516583 (-)
ENSDARG00000025850	rps21	23: 9220436 ~ 9228578 (+)
ENSDARG00000055216	tuba1c	23: 35690657 ~ 35694461 (-)
ENSDARG00000001889	tuba1a	23: 35708730 ~ 35711398 (+)
ENSDARG00000037588	bhlhe23	23: 17655790 ~ 17657348 (-)
ENSDARG00000092807	si:dkey-151g10.6	23: 25305431 ~ 25306603 (+)
ENSDARG00000038954	ctnnbip1	23: 29711569 ~ 29751730 (-)
ENSDARG00000057556	rpl17	21: 18997503 ~ 19067517 (+)
ENSDARG00000058256	draxin	11: 15931188 ~ 16013114 (+)
ENSDARG00000115271	NA	11: 44898714 ~ 44906703 (-)
ENSDARG00000103919	si:ch73-1a9.3	10: 39084354 ~ 39087854 (+)
ENSDARG00000045248	h3f3d	24: 37688729 ~ 37693028 (+)
ENSDARG00000058039	bhlhe22	24: 24461341 ~ 24463346 (+)
ENSDARG00000040008	neurod6a	24: 32411753 ~ 32474949 (+)
ENSDARG00000054818	rpl32	22: 31039091 ~ 31044066 (+)
ENSDARG00000056979	lhx9	22: 23238790 ~ 23253481 (-)
ENSDARG00000013351	cirbpb	22: 18542010 ~ 18546649 (-)
--	rpl37.1	--
--	ebf3a.1	--

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Nascent neurons.

Detail Marker Information in Datasets

Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
PRJNA554650 (6.5dpf)	Danio rerio	brain	5	Nascent neurons	baseline	6.5dpf, whole brain of nr1d1:VNP fish	ENSDARG00000037997 (tubb5)	marker	DOI:10.1038/nbt.4103
PRJNA554650 (6.5dpf)	Danio rerio	brain	6	Nascent neurons	baseline	6.5dpf, whole brain of nr1d1:VNP fish	ENSDARG00000037997 (tubb5)	marker	DOI:10.1038/nbt.4103
PRJNA554650 (6.5dpf)	Danio rerio	brain	7	Nascent neurons	baseline	6.5dpf, whole brain of nr1d1:VNP fish	ENSDARG00000037997 (tubb5)	marker	DOI:10.1038/nbt.4103
PRJNA554650 (6.5dpf)	Danio rerio	brain	10	Nascent neurons	baseline	6.5dpf, whole brain of nr1d1:VNP fish	ENSDARG00000037997 (tubb5)	marker	DOI:10.1038/nbt.4103

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Nascent neurons

Distribution of Nascent neurons in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

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