DATASET ID: GSE158142 (15dpf)

Basic information

Tissue / Organ brain, eye
Experiment type baseline
Sample 15dpf, untreatment
Source dataset ID GSM4793238
Project ID GSE158142
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    2 Neuron ENSDARG00000104945 (sncb) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    2 Neuron ENSDARG00000020609 (snap25a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    2 Neuron ENSDARG00000038574 (scg2b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    3 Neuron ENSDARG00000013351 (cirbpb) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Progenitors -- (rrm2.1) -- marker DOI:10.1016/j.neuron.2020.09.023
    4 Progenitors ENSDARG00000004169 (stmn1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Progenitors ENSDARG00000054155 (pcna) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Progenitors ENSDARG00000011094 (ccna2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Progenitors ENSDARG00000062152 (chaf1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Progenitors ENSDARG00000014499 (nutf2l) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Progenitors ENSDARG00000060041 (lig1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Progenitors ENSDARG00000077620 (cdca7a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Progenitors ENSDARG00000007971 (cks1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    5 Progenitors ENSDARG00000054562 (her15.1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    5 Progenitors ENSDARG00000054560 (her15.2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Glia ENSDARG00000015349 (mfge8a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Glia ENSDARG00000056934 (hepacama) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Glia ENSDARG00000102340 (ptn) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Glia ENSDARG00000053262 (atp1b4) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Glia ENSDARG00000052470 (igfbp2a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Glia ENSDARG00000013430 (bhmt) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Glia ENSDARG00000090980 (apof) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Glia ENSDARG00000059054 (pdk2b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Glia ENSDARG00000099371 (cygb1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Glia ENSDARG00000022650 (cyp2ad3) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    8 Erythroid cells ENSDARG00000115405 (hbbe1.2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    8 Erythroid cells -- (hbz) -- marker DOI:10.1016/j.neuron.2020.09.023
    8 Erythroid cells ENSDARG00000034852 (nt5c2l1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    8 Erythroid cells ENSDARG00000038643 (alas2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    8 Erythroid cells ENSDARG00000105154 (creg1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    8 Erythroid cells ENSDARG00000018146 (gpx1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    8 Erythroid cells ENSDARG00000012881 (slc4a1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Dorsal habenula ENSDARG00000042970 (gng8) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Dorsal habenula ENSDARG00000077162 (nwd2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Dorsal habenula ENSDARG00000069843 (kctd12.1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Blood,immune cell ENSDARG00000027063 (arpc1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Blood,immune cell ENSDARG00000054610 (coro1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Blood,immune cell ENSDARG00000103466 (ccl35.1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Blood,immune cell ENSDARG00000090783 (mfap4) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Blood,immune cell ENSDARG00000055290 (mpeg1.1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Blood,immune cell ENSDARG00000099672 (capgb) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Blood,immune cell ENSDARG00000013771 (ctss2.2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Blood,immune cell ENSDARG00000095627 (c1qc) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Blood,immune cell ENSDARG00000023188 (lcp1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Ventral habenula ENSDARG00000075829 (kiss1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Ventral habenula ENSDARG00000034173 (prkcq) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Ventral habenula ENSDARG00000017710 (ppp1r14ab) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Eye (endothelial, progenitors) ENSDARG00000002701 (rasl12) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Eye (endothelial, progenitors) ENSDARG00000044365 (angptl3) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Eye (endothelial, progenitors) ENSDARG00000040133 (ackr4b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Eye (endothelial, progenitors) ENSDARG00000068036 (tmem119b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    15 Blood,immune cell ENSDARG00000089362 (grn1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    15 Blood,immune cell ENSDARG00000023188 (lcp1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    15 Blood,immune cell ENSDARG00000058389 (ccl19a.1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    15 Blood,immune cell ENSDARG00000038010 (rac2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    15 Blood,immune cell ENSDARG00000026350 (wasb) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    15 Blood,immune cell ENSDARG00000088641 (grn2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)