DATASET ID: PRJNA559885

Basic information

Tissue / Organ caudal fin
Experiment type regeneration
Sample adult, 2-month old, untreatment
Source dataset ID SRR11886701, SRR11917464
Project ID PRJNA559885
Species Nothobranchius furzeri

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Blastema cells msx1 (msx1) protein_coding marker DOI:10.1242/dev.121.2.347
    2 Blastema cells msx1 (msx1) protein_coding marker DOI:10.1242/dev.121.2.347
    3 Blastema cells msx1 (msx1) protein_coding marker DOI:10.1242/dev.121.2.347
    4 Pre-osteoblast sp7 (sp7) protein_coding marker DOI:10.1126/science.aaz3090
    5 Blastema cells msx1 (msx1) protein_coding marker DOI:10.1242/dev.121.2.347
    7 Epidermal cells cdh1 (cdh1) protein_coding marker DOI:10.1126/science.aaz3090
    8 Macrophages csf1r (csf1r) protein_coding marker DOI:10.1126/science.aaz3090
    8 Macrophages marco (marco) protein_coding marker DOI:10.1126/science.aaz3090
    9 Epidermal cells cdh1 (cdh1) protein_coding marker DOI:10.1126/science.aaz3090
    10 Epidermal cells cdh1 (cdh1) protein_coding marker DOI:10.1126/science.aaz3090
    11 Blood cells hemgn (hemgn) protein_coding marker DOI:10.1126/science.aaz3090
    12 Blood cells hemgn (hemgn) protein_coding marker DOI:10.1126/science.aaz3090
    13 Neuron dcx (dcx) protein_coding marker DOI:10.1126/science.aaz3090

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)