DATASET ID: PRJNA559885

Basic information

Tissue / Organ caudal fin
Experiment type regeneration
Sample adult, 2-month old, untreatment
Source dataset ID SRR11886701, SRR11917464
Project ID PRJNA559885
Species Nothobranchius furzeri

Created with Highcharts 9.3.2msx1cdh1hemgnsp7csf1rmarcodcx图表导出菜单Word Cloud of Markers

Clustering Result

Created with Highcharts 9.3.2图表导出菜单Cell Number of each Cell TypeBlastema cellsPre-osteoblastUncharacterizedEpidermal cellsMacrophagesBlood cellsNeuron05001000150020002500300035004000

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Blastema cells msx1 (msx1) protein_coding marker DOI:10.1242/dev.121.2.347
    2 Blastema cells msx1 (msx1) protein_coding marker DOI:10.1242/dev.121.2.347
    3 Blastema cells msx1 (msx1) protein_coding marker DOI:10.1242/dev.121.2.347
    4 Pre-osteoblast sp7 (sp7) protein_coding marker DOI:10.1126/science.aaz3090
    5 Blastema cells msx1 (msx1) protein_coding marker DOI:10.1242/dev.121.2.347
    7 Epidermal cells cdh1 (cdh1) protein_coding marker DOI:10.1126/science.aaz3090
    8 Macrophages csf1r (csf1r) protein_coding marker DOI:10.1126/science.aaz3090
    8 Macrophages marco (marco) protein_coding marker DOI:10.1126/science.aaz3090
    9 Epidermal cells cdh1 (cdh1) protein_coding marker DOI:10.1126/science.aaz3090
    10 Epidermal cells cdh1 (cdh1) protein_coding marker DOI:10.1126/science.aaz3090
    11 Blood cells hemgn (hemgn) protein_coding marker DOI:10.1126/science.aaz3090
    12 Blood cells hemgn (hemgn) protein_coding marker DOI:10.1126/science.aaz3090
    13 Neuron dcx (dcx) protein_coding marker DOI:10.1126/science.aaz3090

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)