DATASET ID: GSE131136 (all)

Basic information

Tissue / Organ trunk, skin
Experiment type baseline
Sample 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
Source dataset ID GSE131136
Project ID GSE131136
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Schwann cells ENSDARG00000025670 (fstl3) protein_coding marker DOI:10.7554/eLife.45181
    2 Schwann cell precursor ENSDARG00000009823 (pou3f1) protein_coding marker DOI:10.7554/eLife.45181
    5 Xanthophores ENSDARG00000071475 (aox5) protein_coding marker DOI:10.7554/eLife.45181
    5 Xanthophores ENSDARG00000025912 (bscl2l) protein_coding marker DOI:10.7554/eLife.45181
    6 Melanophores ENSDARG00000056151 (tyrp1b) protein_coding marker DOI:10.7554/eLife.45181
    6 Melanophores ENSDARG00000006008 (dct) protein_coding marker DOI:10.7554/eLife.45181
    7 Pigment progenitors ENSDARG00000008861 (tfap2e) protein_coding marker DOI:10.7554/eLife.45181
    9 Iridophore ENSDARG00000062688 (gpnmb) protein_coding marker DOI:10.7554/eLife.45181
    9 Iridophore ENSDARG00000098745 (tfec) protein_coding marker DOI:10.7554/eLife.45181
    9 Iridophore ENSDARG00000075343 (csf1a) protein_coding marker DOI:10.7554/eLife.45181
    11 Chromaffin cells ENSDARG00000035338 (tppp2) protein_coding marker DOI:10.7554/eLife.45181
    13 Neuron ENSDARG00000102879 (myt1b) protein_coding marker DOI:10.7554/eLife.45181
    14 Proliferating progenitors ENSDARG00000054155 (pcna) protein_coding marker DOI:10.7554/eLife.45181
    15 Neuron ENSDARG00000102879 (myt1b) protein_coding marker DOI:10.7554/eLife.45181
    16 Satellite glia ENSDARG00000025301 (gfap) protein_coding marker DOI:10.7554/eLife.45181

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)