Fish Single-cell RNA Database

GENE ID: ENSDARG00000099824

Symbol	Location	Gene type	Genome version	Species
nots	4: 78010696 ~ 78020408 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000099824 (nots), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000099824	nots	4: 78010696 ~ 78020408 (-)
ENSDARG00000068432	si:dkey-56m19.5	7: 44713135 ~ 44717498 (+)
ENSDARG00000052074	si:ch211-122f10.4	7: 51816321 ~ 51825070 (+)
ENSDARG00000036430	sat2a	7: 20645121 ~ 20651736 (+)
ENSDARG00000067566	sftpbb	5: 68845048 ~ 68876211 (-)
ENSDARG00000098995	cyp2k6	3: 12816362 ~ 12826387 (+)
ENSDARG00000043002	vmo1a	3: 5403848 ~ 5413018 (-)
ENSDARG00000098114	ctsa	6: 55396807 ~ 55423220 (-)
ENSDARG00000053483	zgc:113054	6: 43450221 ~ 43474757 (+)
ENSDARG00000056480	cpvl	16: 20496691 ~ 20515806 (+)
ENSDARG00000074286	hint3	16: 40024883 ~ 40031779 (+)
ENSDARG00000002467	rdh14b	20: 9421448 ~ 9428021 (-)
ENSDARG00000101051	ctsbb	20: 52886927 ~ 52902720 (-)
ENSDARG00000086522	zp2.5	20: 54312970 ~ 54316972 (+)
ENSDARG00000074185	pcsk9	20: 7398090 ~ 7432867 (+)
ENSDARG00000055120	ctsba	17: 32622931 ~ 32631514 (+)
ENSDARG00000039299	rdh14a	13: 32454262 ~ 32456842 (+)
ENSDARG00000061375	sgpl1	13: 25725547 ~ 25750910 (-)
ENSDARG00000092858	si:ch1073-126c3.2	13: 20535159 ~ 20540790 (-)
ENSDARG00000095067	NA	13: 33141279 ~ 33153889 (-)
ENSDARG00000093381	tgm2l	18: 18803539 ~ 18850302 (-)
ENSDARG00000045299	vmo1b	21: 1618181 ~ 1625976 (-)
ENSDARG00000089844	scarb2c	21: 974555 ~ 989084 (+)
ENSDARG00000016448	vtg3	11: 7359496 ~ 7380688 (-)
ENSDARG00000088539	ponzr2	10: 22123831 ~ 22127942 (-)
ENSDARG00000026198	enoph1	10: 5025696 ~ 5037449 (+)
ENSDARG00000016825	vtg6	22: 24811396 ~ 24818066 (-)
ENSDARG00000078429	vtg4	22: 24784013 ~ 24791505 (-)
ENSDARG00000092126	vtg5	22: 24751101 ~ 24757785 (-)
ENSDARG00000092233	vtg1	22: 24730965 ~ 24738188 (-)
ENSDARG00000092419	vtg7	22: 24851227 ~ 24858050 (-)
ENSDARG00000055809	vtg2	22: 24869690 ~ 24880824 (-)
ENSDARG00000092028	si:dkey-4c23.3	22: 24888649 ~ 24900385 (-)
ENSDARG00000012535	epx	25: 3119810 ~ 3139805 (-)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo	NA	NA	NA
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo	NA	NA	NA
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells	NA	NA	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000099824

EXPRESSION

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