Fish Single-cell RNA Database

GENE ID: ENSDARG00000070867

Symbol	Location	Gene type	Genome version	Species
smx5	6: 28205284 ~ 28207746 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000070867 (smx5), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000091656	lsm8	4: 9536860 ~ 9539424 (+)
ENSDARG00000105037	snrpf	7: 19374683 ~ 19378024 (+)
ENSDARG00000041908	usp39	5: 68826514 ~ 68843111 (+)
ENSDARG00000008032	sart3	5: 20453874 ~ 20481389 (+)
ENSDARG00000075849	prr12b	3: 32425202 ~ 32461604 (+)
ENSDARG00000070867	smx5	6: 28205284 ~ 28207746 (+)
ENSDARG00000011125	snrpb	6: 57478337 ~ 57485411 (-)
ENSDARG00000039213	prpf38a	6: 33926829 ~ 33931696 (-)
ENSDARG00000091652	xrn1	2: 16597011 ~ 16647259 (+)
ENSDARG00000017423	patl1	1: 52763979 ~ 52790782 (-)
ENSDARG00000036995	lsm6	1: 36194761 ~ 36204000 (+)
ENSDARG00000058962	txnl4b	1: 513986 ~ 518076 (+)
ENSDARG00000095904	prpf31	16: 32082359 ~ 32090672 (+)
ENSDARG00000007901	crnkl1	20: 49081967 ~ 49103317 (+)
ENSDARG00000043177	lsm1	8: 44613135 ~ 44618213 (+)
ENSDARG00000040440	snrpd2	18: 40875873 ~ 40884087 (-)
ENSDARG00000071573	lsm5	12: 13331526 ~ 13337037 (-)
ENSDARG00000011648	snrpd1	19: 1872794 ~ 1877746 (+)
ENSDARG00000091367	prpf6	23: 6998633 ~ 7052412 (-)
ENSDARG00000004956	zmat2	21: 30293564 ~ 30300049 (+)
ENSDARG00000005945	sart1	21: 27302752 ~ 27324771 (+)
ENSDARG00000033175	snrpe	11: 37720552 ~ 37726201 (+)
ENSDARG00000023852	lsm4	11: 6859876 ~ 6868474 (-)
ENSDARG00000104242	dcp2	10: 6473092 ~ 6494070 (-)
ENSDARG00000058328	lsm7	22: 10752511 ~ 10756047 (+)
ENSDARG00000089663	lsm3	22: 31660964 ~ 31672566 (-)
ENSDARG00000051931	edc3	25: 20668272 ~ 20691609 (-)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment	NA	NA	NA
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment	NA	NA	NA
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment	NA	NA	NA
GSE151354 (wild type)	cartilage	baseline	21dpf, wild type	NA	NA	NA
GSE151354 (nkx3.2 mutant)	cartilage	growth	21dpf, nkx3.2 mutant	NA	NA	NA
GSE130526 (fin)	dorsal and anal fin	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry	NA	NA	NA
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo	NA	NA	NA
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo	NA	NA	NA
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells	NA	NA	NA
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells	NA	NA	NA
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment	NA	NA	NA
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment	NA	NA	NA
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment	NA	NA	NA
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment	NA	NA	NA
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment	NA	NA	NA
GSE158142 (24hpf)	head	baseline	24hpf, untreatment	NA	NA	NA
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment	NA	NA	NA
GSE158142 (2dpf)	head	baseline	2dpf, untreatment	NA	NA	NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	NA	NA	NA
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl	NA	NA	NA
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated	NA	NA	NA
GSE123241 (wild type)	neuromast	baseline	5dpf, wild type during sensory hair cell regeneration, lateral line sensory	NA	NA	NA
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory	NA	NA	NA
GSE123241 (fgf3 siblings)	neuromast	regeneration	5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory	NA	NA	NA
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment	NA	NA	NA
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment	NA	NA	NA
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment	NA	NA	NA
GSE122680 (14dpf)	retina	baseline	14dpf, WT, untreatment	NA	NA	NA
GSE122680 (2dpf)	retina	baseline	2dpf, WT, untreatment	NA	NA	NA
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells	NA	NA	NA
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000070867

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences