Fish Single-cell RNA Database

GENE ID: ENSDARG00000093342

Symbol	Location	Gene type	Genome version	Species
si:ch211-13f8.1	2: 7192966 ~ 7209705 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000093342 (si:ch211-13f8.1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000053453	mpp2a	3: 33345347 ~ 33379440 (+)
ENSDARG00000099979	tgfbr3	6: 24398907 ~ 24598752 (+)
ENSDARG00000076872	mpp4l	6: 9867426 ~ 9886822 (+)
ENSDARG00000025974	magi3b	6: 47529881 ~ 47796989 (-)
ENSDARG00000093342	si:ch211-13f8.1	2: 7192966 ~ 7209705 (+)
ENSDARG00000021225	prkci	2: 37365551 ~ 37401600 (-)
ENSDARG00000078789	tmem184c	1: 36722122 ~ 36746569 (+)
ENSDARG00000058222	mpp4a	9: 13682133 ~ 13711991 (+)
ENSDARG00000015681	gsk3ab	16: 11242443 ~ 11292148 (+)
ENSDARG00000028354	stxbp6l	20: 9828769 ~ 9848953 (+)
ENSDARG00000002656	stxbp5a	20: 31745949 ~ 31905968 (-)
ENSDARG00000004721	mpp5b	20: 51006362 ~ 51081372 (+)
ENSDARG00000039456	acbd6	8: 14381272 ~ 14441812 (+)
ENSDARG00000057826	si:ch73-61d6.3	8: 13190314 ~ 13211527 (-)
ENSDARG00000043332	prkcz	8: 17554313 ~ 17771755 (-)
ENSDARG00000028393	daam2	17: 48831579 ~ 48892781 (+)
ENSDARG00000095339	si:dkeyp-44a8.4	14: 6628863 ~ 6727717 (-)
ENSDARG00000074059	dlg5a	13: 16342926 ~ 16499000 (+)
ENSDARG00000093286	CABZ01039782.1	18: 26124663 ~ 26126258 (-)
ENSDARG00000029501	gsk3aa	19: 6059673 ~ 6083784 (-)
ENSDARG00000088505	fam217b	23: 12155165 ~ 12158685 (-)
ENSDARG00000089078	si:ch211-160j14.3	21: 32089491 ~ 32119965 (-)
ENSDARG00000009386	mpp4l	21: 18976623 ~ 18993110 (-)
ENSDARG00000079472	NA	21: 5846969 ~ 5856050 (-)
ENSDARG00000054575	waif2	10: 36150911 ~ 36156658 (+)
ENSDARG00000005108	oclna	10: 2924775 ~ 2943474 (-)
--	magi3	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	Bipolar cells (cluster: 5)	potential marker	NA
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE130526 (fin)	dorsal and anal fin	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000093342

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences