|
Dataset ID |
Tissue / Organ |
Experiment type |
Sample |
Cell type |
Marker class |
Evidence |
|
GSE126647 (control) |
embryo |
baseline |
1.17dpf, control nkx2.5:ZsYellow+ cells |
More-differentiated SHFPs (cluster: 3)
|
potential marker
|
NA
|
|
GSE151354 (wild type) |
cartilage |
baseline |
21dpf, wild type |
|
|
|
|
GSE151354 (nkx3.2 mutant) |
cartilage |
growth |
21dpf, nkx3.2 mutant |
|
|
|
|
GSE144944 (fgfr3 +|+) |
cranial vault |
baseline |
1mpf, fgfr3 +/+ |
|
|
|
|
GSE144944 (fgfr3 -|-) |
cranial vault |
growth |
1mpf, fgfr3 -/- |
|
|
|
|
GSE126647 (Pbx4-depleted) |
embryo |
growth |
1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells |
|
|
|
|
PRJNA734348 (dome, control) |
embryo |
baseline |
4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV) |
|
|
|
|
PRJNA734348 (dome, dnmt1) |
embryo |
growth |
4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV) |
|
|
|
|
PRJNA734348 (shield, dnmt1) |
embryo |
growth |
6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV) |
|
|
|
|
PRJNA640816 (2dpf) |
embryo |
baseline |
2dpf, FACS isolated -4.9sox10:EGFP+ cells |
|
|
|
|
PRJNA640816 (2.9dpf) |
embryo |
baseline |
2.9dpf, FACS isolated -4.9sox10:EGFP+ cells |
|
|
|
|
PRJNA706197 (24hpf) |
embryo |
baseline |
24hpf, FACS sorted sox10:nEOS cells |
|
|
|
|
PRJNA706197 (18hpf) |
embryo |
baseline |
18hpf, FACS sorted sox10:nEOS cells |
|
|
|
|
PRJNA564810 (2dpf) |
embryo |
baseline |
2dpf, a single-cell transcriptome atlas for zebrafish development |
|
|
|
|
PRJNA564810 (1dpf) |
embryo |
baseline |
1dpf, a single-cell transcriptome atlas for zebrafish development |
|
|
|
|
PRJNA608912 (kit_uninjuried) |
heart |
regeneration |
5mpf, kit mutant, uninjured |
|
|
|
|
PRJNA608912 (kit_2dpi) |
heart |
regeneration |
5mpf, kit mutant, 2 days post injury |
|
|
|
|
PRJNA608912 (kit_14dpi) |
heart |
regeneration |
5mpf, kit mutant, 14 days post injury |
|
|
|
|
GSE148591 (6mpf) |
pituitary |
baseline |
6mpf, male, Sox17:CreERT2 |
|
|
|
|
GSE175929 (5mpf) |
retina |
baseline |
5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg |
|
|
|
|
GSE122680 (24hpf) |
retina |
baseline |
24hpf, WT, untreatment |
|
|
|
|
GSE122680 (1.5dpf) |
retina |
baseline |
1.5dpf, WT, untreatment |
|
|
|
|
GSE122680 (3dpf) |
retina |
baseline |
3dpf, WT, untreatment |
|
|
|
|
GSE122680 (14dpf) |
retina |
baseline |
14dpf, WT, untreatment |
|
|
|
|
GSE122680 (2dpf) |
retina |
baseline |
2dpf, WT, untreatment |
|
|
|
|
PRJNA551501 (2mpf) |
thyroid gland |
baseline |
2mpf, Tg(tg:mVenus-T2A-NTR) |
|
|
|
|
PRJNA551501 (8mpf) |
thyroid gland |
baseline |
8mpf, Tg(tg:mVenus-T2A-NTR) |
|
|
|
|
GSE152982 (wild type) |
trunk |
baseline |
1.25dpf, untreatment |
|
|
|
|
GSE131136 (all) |
trunk, skin |
baseline |
5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone |
|
|
|
|
PRJNA641144 (D_PRO) |
tumor |
disease |
adult, ZMEL1-PRO cells in vitro individual culture |
|
|
|
|
PRJNA641144 (C_INV) |
tumor |
disease |
adult, ZMEL1-INV cells in vitro co-culture |
|
|
|
|
PRJNA641144 (C_PRO) |
tumor |
disease |
adult, ZMEL1-PRO cells in vitro co-culture |
|
|
|
|
GSE176129 (pdgfrb-positive) |
whole body |
baseline |
5dpf, FACS-isolated pdgfrb-positive cells |
|
|
|
|
GSE158099 (WT) |
whole body |
baseline |
16dpf, cd41:GFPlow-WT |
|
|
|
|
GSE158099 (runx1 -|-) |
whole body |
hematopoietic |
16dpf, cd41:GFPlow-runx1-/- |
|
|
|
|
GSE158099 (runx1 -|-) |
whole body |
hematopoietic |
16dpf, cd41:GFPlow-runx1-/- |
|
|
|