Fish Single-cell RNA Database

GENE ID: ENSDARG00000051912

Symbol	Location	Gene type	Genome version	Species
hpxb	16: 2394193 ~ 2414063 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000051912 (hpxb), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000053630	si:dkey-182o15.5	7: 29509255 ~ 29515727 (+)
ENSDARG00000002235	mmp14a	7: 24124289 ~ 24149670 (-)
ENSDARG00000093796	itln2	7: 33136533 ~ 33143009 (+)
ENSDARG00000017676	mmp2	7: 35410050 ~ 35432901 (-)
ENSDARG00000089310	gc	5: 45677781 ~ 45725008 (+)
ENSDARG00000075261	timp2b	3: 57632965 ~ 57666996 (-)
ENSDARG00000010482	prg4a	2: 20793982 ~ 20812059 (+)
ENSDARG00000008388	mmp14b	2: 38161318 ~ 38183641 (+)
ENSDARG00000069293	ahsg2	2: 10134345 ~ 10141741 (+)
ENSDARG00000013072	mmp15b	2: 28453338 ~ 28521429 (+)
ENSDARG00000020741	fga	1: 10063501 ~ 10071539 (-)
ENSDARG00000037281	fgg	1: 25669799 ~ 25679383 (-)
ENSDARG00000051912	hpxb	16: 2394193 ~ 2414063 (-)
ENSDARG00000102094	wu:fd46c06	16: 31658196 ~ 31661536 (-)
ENSDARG00000028163	prg4b	20: 34029820 ~ 34039638 (+)
ENSDARG00000031587	flvcr1	20: 37844035 ~ 37862535 (+)
ENSDARG00000042816	mmp9	8: 24281512 ~ 24295947 (+)
ENSDARG00000038957	flvcr2a	17: 51906053 ~ 51929012 (+)
ENSDARG00000061226	timp2a	12: 33990947 ~ 34035364 (-)
ENSDARG00000026149	slc46a1	15: 28175638 ~ 28186529 (+)
ENSDARG00000055388	vtna	15: 28202170 ~ 28208926 (+)
ENSDARG00000061383	serpinf2b	15: 26540981 ~ 26552652 (-)
ENSDARG00000103727	tfr2	23: 44940700 ~ 44965582 (-)
ENSDARG00000078915	mmp17a	21: 14892050 ~ 15046065 (-)
ENSDARG00000004296	ambp	10: 10801564 ~ 10824286 (+)
ENSDARG00000070892	si:ch211-262h13.5	22: 38812549 ~ 38819603 (-)
ENSDARG00000026764	ahsg1	22: 37874691 ~ 37881714 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Hepatocytes (cluster: 20)	potential marker	NA
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases	Melanoma cells (cluster: 8)	potential marker	NA
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases	Melanoma cells (cluster: 8)	potential marker	NA
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos
GSE173972 (HET, ezh1+\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
GSE173972 (KO, ezh1-\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
PRJNA656271 (24hpf)	embryo	baseline	24hpf, FACS-isolated EGFP+ cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000051912

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences