Fish Single-cell RNA Database

GENE ID: ENSDARG00000091233

Symbol	Location	Gene type	Genome version	Species
FP236356.1	17: 48486308 ~ 48504329 (-)	lincRNA	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000091233 (FP236356.1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000069961	il21r.1	3: 45343782 ~ 45361573 (-)
ENSDARG00000092106	si:ch211-214p13.8	9: 9295428 ~ 9303359 (+)
ENSDARG00000061717	cytip	9: 5253137 ~ 5263947 (-)
ENSDARG00000043904	pnrc1	20: 1121458 ~ 1125395 (+)
ENSDARG00000042440	p2rx7	8: 30758169 ~ 30779101 (-)
ENSDARG00000015752	zap70	8: 20393250 ~ 20414364 (+)
ENSDARG00000091233	FP236356.1	17: 48486308 ~ 48504329 (-)
ENSDARG00000079826	gpr174	14: 10567104 ~ 10601294 (+)
ENSDARG00000013539	ikzf1	13: 15957508 ~ 15994472 (-)
ENSDARG00000009837	agk	18: 20532618 ~ 20540709 (+)
ENSDARG00000104197	ptpn22	23: 26142613 ~ 26180539 (+)
ENSDARG00000095643	si:dkey-253d23.3	22: 9862243 ~ 9868707 (+)
ENSDARG00000079762	si:dkey-253d23.4	22: 9871238 ~ 9880408 (+)
ENSDARG00000071588	BX539307.1	22: 9854088 ~ 9855270 (+)
ENSDARG00000052121	rag2	25: 9010425 ~ 9013963 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	Immune cells (cluster: 4)	potential marker	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	Immune cells (cluster: 4)	potential marker	NA
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum	T cells (cluster: 13)	potential marker	NA
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC	Immune cells (cluster: 9)	potential marker	NA
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC	Immune cells (cluster: 4)	potential marker	NA
GSE137784 (no HCC)	liver	baseline	6mpf, male, isolated from the CreLox zebrafish with HCC	Immune cells (cluster: 2)	potential marker	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000091233

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences