Fish Single-cell RNA Database

GENE ID: ENSDARG00000053062

Symbol	Location	Gene type	Genome version	Species
NA	17: 6382275 ~ 6385314 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000053062 (NA), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000034207	cx44.2	6: 21001264 ~ 21028431 (+)
ENSDARG00000029463	asap1a	2: 32263215 ~ 32356539 (-)
ENSDARG00000042707	cx30.3	9: 21401189 ~ 21405066 (+)
ENSDARG00000039970	cnr2	16: 33109496 ~ 33119626 (+)
ENSDARG00000054152	nmbr	20: 37263663 ~ 37287107 (-)
ENSDARG00000013732	vta1	20: 37300296 ~ 37379578 (+)
ENSDARG00000078095	cipcb	20: 54333774 ~ 54346440 (+)
ENSDARG00000008218	znf410	20: 54349333 ~ 54360183 (+)
ENSDARG00000007169	itgb1bp1	17: 35225614 ~ 35238359 (-)
ENSDARG00000003925	cx28.6	17: 14711765 ~ 14712599 (+)
ENSDARG00000075397	cipca	17: 44756247 ~ 44761580 (+)
ENSDARG00000010181	asap2a	17: 35097024 ~ 35223482 (+)
ENSDARG00000053062	NA	17: 6382275 ~ 6385314 (+)
ENSDARG00000058064	cx31.7	14: 12316606 ~ 12334053 (+)
ENSDARG00000068374	si:ch211-132b12.7	18: 40668615 ~ 40684792 (-)
ENSDARG00000070357	cx39.4	19: 37153409 ~ 37154436 (-)
ENSDARG00000035957	gmnn	19: 31541607 ~ 31592425 (+)
ENSDARG00000039729	asap1b	24: 10897768 ~ 11057305 (-)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells	NA	NA	NA
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells	NA	NA	NA
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells	NA	NA	NA
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells	NA	NA	NA
PRJNA706197 (14hpf)	embryo	baseline	14hpf, FACS sorted sox10:nEOS cells	NA	NA	NA
PRJNA706197 (20hpf)	embryo	baseline	20hpf, FACS sorted sox10:nEOS cells	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured	NA	NA	NA
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury	NA	NA	NA
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury	NA	NA	NA
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet	NA	NA	NA
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment	NA	NA	NA
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment	NA	NA	NA
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment	NA	NA	NA
GSE122680 (14dpf)	retina	baseline	14dpf, WT, untreatment	NA	NA	NA
GSE122680 (2dpf)	retina	baseline	2dpf, WT, untreatment	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000053062

EXPRESSION

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