Fish Single-cell RNA Database

GENE ID: ENSDARG00000020237

Symbol	Location	Gene type	Genome version	Species
mc1r	18: 31226288 ~ 31227615 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000020237 (mc1r), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000069089	agrp	7: 35080490 ~ 35083585 (-)
ENSDARG00000029204	tyrp1a	7: 74084203 ~ 74090168 (-)
ENSDARG00000003732	mitfa	6: 43390387 ~ 43433277 (+)
ENSDARG00000077858	asip1	6: 49975910 ~ 49983329 (-)
ENSDARG00000061303	oca2	6: 37894220 ~ 38054851 (+)
ENSDARG00000021225	prkci	2: 37365551 ~ 37401600 (-)
ENSDARG00000056151	tyrp1b	1: 19332837 ~ 19346048 (+)
ENSDARG00000087290	si:ch211-202h22.10	1: 54606354 ~ 54608032 (+)
ENSDARG00000041998	zgc:113337	9: 9322424 ~ 9348058 (-)
ENSDARG00000006008	dct	9: 53327332 ~ 53352682 (+)
ENSDARG00000074763	mrap2a	16: 37947342 ~ 37964325 (-)
ENSDARG00000069307	pomcb	20: 42968785 ~ 42972599 (-)
ENSDARG00000067509	slc24a4b	20: 50115335 ~ 50198207 (+)
ENSDARG00000043135	pomca	17: 33226955 ~ 33230039 (+)
ENSDARG00000062164	atrn	13: 14006118 ~ 14181984 (+)
ENSDARG00000078448	gpr137ba	13: 50151407 ~ 50171965 (+)
ENSDARG00000024771	slc24a5	18: 5213338 ~ 5227420 (+)
ENSDARG00000020237	mc1r	18: 31226288 ~ 31227615 (-)
ENSDARG00000100072	mgrn1a	12: 20122256 ~ 20149558 (+)
ENSDARG00000091992	mrap	15: 5628363 ~ 5630452 (+)
ENSDARG00000075436	sytl2b	15: 19697246 ~ 19724932 (-)
ENSDARG00000069744	mos	15: 17098351 ~ 17099560 (-)
ENSDARG00000039077	tyr	15: 43799258 ~ 43818697 (+)
ENSDARG00000086669	edn3b	23: 12072980 ~ 12106839 (+)
ENSDARG00000090634	smim29	23: 3721041 ~ 3744838 (+)
ENSDARG00000037833	mitfb	23: 711075 ~ 764135 (-)
ENSDARG00000069495	tmem179b	21: 25664393 ~ 25669820 (-)
ENSDARG00000002593	slc45a2	21: 19445942 ~ 19484289 (+)
ENSDARG00000116608	pitx1	21: 45816030 ~ 45824439 (+)
ENSDARG00000057112	gpr25	11: 24703108 ~ 24704437 (+)
ENSDARG00000091298	pmela	11: 3254252 ~ 3272020 (+)
ENSDARG00000036117	mchr2	24: 34806822 ~ 34823043 (+)
ENSDARG00000052121	rag2	25: 9010425 ~ 9013963 (-)
ENSDARG00000090108	si:ch1073-174d20.1	25: 37126921 ~ 37137446 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Melanophores (cluster: 45)	potential marker	NA
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE130526 (fin)	dorsal and anal fin	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
PRJNA641144 (D_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro individual culture
PRJNA641144 (C_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro co-culture
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000020237

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences