Fish Single-cell RNA Database

GENE ID: ENSDARG00000076030

Symbol	Location	Gene type	Genome version	Species
cacnb3b	23: 26946429 ~ 26959206 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000076030 (cacnb3b), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000014804	cacna2d1a	4: 19768679 ~ 19884440 (-)
ENSDARG00000026855	cacna2d4a	4: 20271463 ~ 20292853 (-)
ENSDARG00000008398	cacna1c	4: 20318127 ~ 20474972 (+)
ENSDARG00000006474	saxo2	7: 12371061 ~ 12380200 (+)
ENSDARG00000021735	cacna1ba	5: 29296396 ~ 29488245 (-)
ENSDARG00000037905	cacna1aa	3: 33773156 ~ 33901483 (-)
ENSDARG00000037790	pvalb8	3: 61154219 ~ 61162750 (-)
ENSDARG00000014209	odf3l2a	2: 41926707 ~ 41934019 (+)
ENSDARG00000091072	cib3	2: 55249838 ~ 55266971 (+)
ENSDARG00000062346	cacna1ea	8: 14710542 ~ 14828450 (+)
ENSDARG00000069262	erich3	8: 17933475 ~ 17947205 (+)
ENSDARG00000042552	cacna1sb	8: 25767610 ~ 25808403 (+)
ENSDARG00000063001	atp8a1	14: 44860335 ~ 44963865 (+)
ENSDARG00000073752	NA	18: 9749375 ~ 9948604 (+)
ENSDARG00000076030	cacnb3b	23: 26946429 ~ 26959206 (+)
ENSDARG00000079295	cacna1bb	21: 14381227 ~ 14630840 (-)
ENSDARG00000006923	cacna1ab	11: 30817943 ~ 31026335 (+)
ENSDARG00000053876	klhl26	11: 6881001 ~ 6895981 (+)
ENSDARG00000029457	cacna1sa	22: 912450 ~ 968484 (-)
ENSDARG00000021432	odf3l2b	22: 21305682 ~ 21311540 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment	NA	NA	NA
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo	NA	NA	NA
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells	NA	NA	NA
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment	NA	NA	NA
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih	NA	NA	NA
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells	NA	NA	NA
PRJNA641144 (P_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo primary tumors	NA	NA	NA
PRJNA641144 (P_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo primary tumors	NA	NA	NA
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases	NA	NA	NA
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases	NA	NA	NA
PRJNA641144 (D_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro individual culture	NA	NA	NA
PRJNA641144 (D_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vitro individual culture	NA	NA	NA
PRJNA641144 (C_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro co-culture	NA	NA	NA
PRJNA641144 (C_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vitro co-culture	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000076030

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences