PROJECT ID: GSE126647


Data source GEO: GSE126647
Description Development of the vertebrate heart requires the appropriate integration of temporally-distinct differentiating progenitor populations. While factors that promote accrual of later-differentiating second heart field (SHF)-derived cells to the outflow tract (OFT) have been intensively investigated, few signals are understood that specifically restrict the size of the vertebrate OFT. Here, we show that improper specification and proliferation of SHF progenitors in zebrafish lazarus (lzr) mutants, which lack the transcription factor Pbx4, produces enlarged hearts with a specific increase in ventricular cardiomyocytes and smooth muscle cells within the OFT. Specifically, optogenetic lineage-tracing demonstrates Pbx4 initially promotes the proper partitioning of the SHF into anterior progenitors, which contribute to the OFT, and adjacent endothelial cell progenitors, which contribute to posterior pharyngeal arch arteries. Subsequently, Pbx4 also limits the size of the SHF through repressing SHF progenitor proliferation. Single-cell RNA sequencing of nkx2.5+ cells revealed that the enlarged SHF progenitor population within Pbx4-deficient embryos assimilates characteristics of normally distinct proliferative and more anterior, differentiated cardiomyocyte populations. Therefore, the generation of proper OFT size and great arteries in vertebrates requires Pbx-dependent stratification of unique progenitor differentiation states to facilitate homeotic-like transformations and limit progenitor production within the SHF.
Key word heart development; Pbx transcription factor; second heart field; zebrafish; pharyngeal arch arteries; outflow tract; distinct phases; hindbrain; proteins; growth; specification; expression; reveals; kinase; genes
Publication Holowiecki A, Linstrum K, Ravisankar P, Chetal K et al. Pbx4 limits heart size and fosters arch artery formation by partitioning second heart field progenitors and restricting proliferation. Development 2020 Mar 2;147(5). PMID: 32094112
Abstract Vertebrate heart development requires the integration of temporally distinct differentiating progenitors. However, few signals are understood that restrict the size of the later-differentiating outflow tract (OFT). We show that improper specification and proliferation of second heart field (SHF) progenitors in zebrafish Lazarus (lzr) mutants, which lack the transcription factor Pbx4, produces enlarged hearts owkra to an increase in ventricular and smooth muscle cells. Specifically, Pbx4 initially promotes the partitioning of the SHF into anterior progenitors, which contribute to the OFT, and adjacent endothelial cell progenitors, which contribute to posterior pharyngeal arches. Subsequently, Pbx4 limits SHF progenitor (SHFP) proliferation. Single cell RNA sequencing of nkx2.5(+) cells revealed previously unappreciated distinct differentiation states and progenitor subpopulations that normally reside within the SHF and arterial pole of the heart. Specifically, the transcriptional profiles of Pbx4-deficient nkx2.5(+) SHFPs are less distinct and display characteristics of normally discrete proliferative progenitor and anterior, differentiated cardiomyocyte populations. Therefore, our data indicate that the generation of proper OFT size and arch arteries requires Pbx-dependent stratification of unique differentiation states to facilitate both homeotic-like transformations and limit progenitor production within the SHF.


Dataset Information


Dataset ID Species Tissue / Organ Experiment type Sample Source dataset ID
1. GSE126647 (control) Danio rerio embryo baseline 1.17dpf, control nkx2.5:ZsYellow+ cells GEO: GSM3610370
2. GSE126647 (Pbx4-depleted) Danio rerio embryo growth 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells GEO: GSM3610371

Clustering Result


Cluster Cell type Gene id (symbol) Marker class Evidence
2 Differentiated art.CMs ENSDARG00000028213 (ttn.2) marker DOI:10.1242/dev.185652
3 More-differentiated SHFPs ENSDARG00000058179 (ackr3b) marker DOI:10.1242/dev.185652
4 Less-differentiated SHFPs ENSDARG00000037116 (cxcl12a) marker DOI:10.1242/dev.185652
8 Endothelium ENSDARG00000103533 (clec14a) marker DOI:10.1242/dev.185652
10 SHFP ENSDARG00000104181 (tmsb1) marker DOI:10.1242/dev.185652
12 Skeletal muscle cells ENSDARG00000035958 (tnni2b.1) marker DOI:10.1242/dev.185652
13 SHFP ENSDARG00000102178 (emilin2b) marker DOI:10.1242/dev.185652

Cluster Cell type Gene id (symbol) Marker class Evidence
3 More-differentiated SHFPs ENSDARG00000058179 (ackr3b) marker DOI:10.1242/dev.185652
4 Differentiated art.ventricle ENSDARG00000103515 (vcana) marker DOI:10.1242/dev.185652
5 Less-differentiated SHFPs ENSDARG00000037116 (cxcl12a) marker DOI:10.1242/dev.185652
6 Endothelium ENSDARG00000103533 (clec14a) marker DOI:10.1242/dev.185652
9 Proliferative SHFPs ENSDARG00000103754 (aspm) marker DOI:10.1242/dev.185652
10 SHFP ENSDARG00000104181 (tmsb1) marker DOI:10.1242/dev.185652
11 Skeletal muscle cells ENSDARG00000035958 (tnni2b.1) marker DOI:10.1242/dev.185652
13 SHFP ENSDARG00000102178 (emilin2b) marker DOI:10.1242/dev.185652