Fish Spatial Expression Database

GENE ID: ENSDARG00000074274

Symbol	Location	Gene type	Genome version	Species
NA	2: 56657804 ~ 56671326 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000074274 (NA), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000058349	polr2l	7: 13363898 ~ 13371484 (-)
ENSDARG00000025391	pfdn2	7: 7477398 ~ 7493758 (-)
ENSDARG00000036489	NA	7: 40081630 ~ 40092016 (+)
ENSDARG00000074968	polr2m	7: 30282389 ~ 30286764 (+)
ENSDARG00000035146	polr2j	5: 61459422 ~ 61465028 (+)
ENSDARG00000036625	polr2f	3: 1511199 ~ 1520657 (-)
ENSDARG00000037835	polr3k	3: 46380086 ~ 46384147 (+)
ENSDARG00000002591	ruvbl1	6: 40832635 ~ 40841032 (+)
ENSDARG00000076509	polr2d	2: 1124512 ~ 1129721 (+)
ENSDARG00000074274	NA	2: 56657804 ~ 56671326 (+)
ENSDARG00000006816	gtf2f2b	9: 18829360 ~ 18905317 (+)
ENSDARG00000019339	uxt	8: 8699085 ~ 8704430 (+)
ENSDARG00000037570	polr1d	14: 9077314 ~ 9085349 (-)
ENSDARG00000056127	polr2gl	14: 26715626 ~ 26719053 (+)
ENSDARG00000077469	polr1b	13: 41917606 ~ 41940467 (+)
ENSDARG00000039400	polr1c	13: 28690355 ~ 28694924 (+)
ENSDARG00000026664	uri1	18: 14693682 ~ 14705999 (+)
ENSDARG00000040443	polr2i	18: 40909821 ~ 40913301 (-)
ENSDARG00000037358	polr3e	12: 1014418 ~ 1034460 (-)
ENSDARG00000042054	zgc:171971	12: 7268392 ~ 7280551 (-)
ENSDARG00000075616	polr2k	19: 11978209 ~ 11981656 (+)
ENSDARG00000024416	twistnb	19: 2395114 ~ 2404599 (-)
ENSDARG00000012927	tcea2	23: 8718950 ~ 8733092 (-)
ENSDARG00000069373	crcp	21: 31244500 ~ 31252131 (-)
ENSDARG00000069525	gpn3	21: 17016337 ~ 17022654 (+)
ENSDARG00000013122	maf1	11: 24046179 ~ 24056609 (+)
ENSDARG00000012572	polr3f	22: 25034740 ~ 25043103 (-)
ENSDARG00000038505	polr2h	22: 36521139 ~ 36530902 (-)
ENSDARG00000033596	polr2c	25: 14369493 ~ 14378835 (-)
ENSDARG00000012592	NA	--
ENSDARG00000017820	NA	--
ENSDARG00000019489	NA	--
ENSDARG00000038399	NA	--
ENSDARG00000076177	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE158849 (embryo replicate1)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812175	GSE158849
GSE158849 (embryo replicate2)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812176	GSE158849
GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873
GSE59873 (shield, V to A)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole	GSM1448796	GSE59873
GSE59873 (shield, V to A, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole, replicate	GSM1448797	GSE59873
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
GSE59873 (shield, R to L)	embryo	baseline	shield stage, intact embryo, sectioned from right to left	GSM1448799	GSE59873
GSE59873 (shield, V to D)	embryo	baseline	shield stage, intact embryo, sectioned from ventral to dorsal end	GSM1448800	GSE59873
GSE59873 (shield, D to V)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end	GSM1448801	GSE59873
GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

15 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
	GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000074274

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.