Fish Spatial Expression Database

GENE ID: ENSDARG00000070121

Symbol	Location	Gene type	Genome version	Species
rhoh	1: 23398405 ~ 23398992 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000070121 (rhoh), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000013476	arhgef39	4: 12401146 ~ 12477278 (-)
ENSDARG00000078979	arhgef40	7: 73488035 ~ 73571518 (+)
ENSDARG00000036420	si:dkey-33c9.6	7: 20383841 ~ 20436781 (+)
ENSDARG00000002816	rasgrf2b	5: 51443009 ~ 51581775 (+)
ENSDARG00000004034	arhgdig	3: 27713610 ~ 27769232 (+)
ENSDARG00000043795	arhgdia	3: 59899452 ~ 59947208 (+)
ENSDARG00000079467	si:ch73-15b2.5	6: 40563848 ~ 40572550 (+)
ENSDARG00000075962	vav3b	2: 15993389 ~ 16159491 (-)
ENSDARG00000012914	arhgef4	2: 16198735 ~ 16359042 (-)
ENSDARG00000000086	itsn1	1: 46999441 ~ 47089818 (-)
ENSDARG00000079377	arhgef38	1: 26411496 ~ 26437820 (+)
ENSDARG00000075859	mcf2la	1: 46493944 ~ 46594288 (+)
ENSDARG00000070121	rhoh	1: 23398405 ~ 23398992 (+)
ENSDARG00000055837	arhgef1b	16: 26140895 ~ 26232411 (-)
ENSDARG00000000370	triob	16: 8751815 ~ 8927425 (-)
ENSDARG00000077114	arhgef16	8: 47099033 ~ 47143828 (+)
ENSDARG00000075793	prex1	8: 25423133 ~ 25569920 (-)
ENSDARG00000097964	arhgef33	17: 24668528 ~ 24680965 (-)
ENSDARG00000006683	arhgef6	14: 31799787 ~ 31856819 (-)
ENSDARG00000002463	arhgef37	14: 24840669 ~ 24873654 (+)
ENSDARG00000022895	mcf2a	14: 32440639 ~ 32503363 (-)
ENSDARG00000060506	sos2	13: 36638955 ~ 36663358 (-)
ENSDARG00000073765	gna13a	12: 20552190 ~ 20564678 (+)
ENSDARG00000061844	si:dkey-38p12.3	12: 22359700 ~ 22400999 (-)
ENSDARG00000058459	plekhg2	15: 20281305 ~ 20352045 (+)
ENSDARG00000076179	ngef	15: 40074923 ~ 40133784 (+)
ENSDARG00000030532	arhgef12a	15: 22448456 ~ 22538843 (+)
ENSDARG00000078853	arhgef19	23: 24140043 ~ 24148646 (-)
ENSDARG00000025902	plekhg5a	11: 24464356 ~ 24538860 (-)
ENSDARG00000078430	tiam1a	10: 25572372 ~ 25657506 (-)
ENSDARG00000013834	arhgef3	22: 38968246 ~ 38993218 (+)
ENSDARG00000067634	NA	--
ENSDARG00000090746	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate1)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812175	GSE158849

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
	GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000070121

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.