Fish Spatial Expression Database

GENE ID: ENSDARG00000042114

Symbol	Location	Gene type	Genome version	Species
bin1a	9: 7410798 ~ 7444753 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000042114 (bin1a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000015931	snap91b	4: 5260941 ~ 5302866 (-)
ENSDARG00000029170	si:ch211-200p22.4	7: 23748971 ~ 23848012 (-)
ENSDARG00000037560	mtm1	7: 25825667 ~ 25854387 (+)
ENSDARG00000010042	dnm1a	5: 1278092 ~ 1421927 (+)
ENSDARG00000009281	dnm1b	5: 63668735 ~ 63737734 (+)
ENSDARG00000078722	clip1a	5: 67188245 ~ 67241633 (-)
ENSDARG00000087616	maptb	3: 22158024 ~ 22216771 (-)
ENSDARG00000069937	dnm2a	3: 47130912 ~ 47213115 (+)
ENSDARG00000058820	bin1b	6: 6999487 ~ 7052603 (-)
ENSDARG00000010255	bin2b	6: 38879961 ~ 38894366 (+)
ENSDARG00000077473	mych	6: 50451337 ~ 50454833 (+)
ENSDARG00000007663	amph	2: 31891335 ~ 31937005 (-)
ENSDARG00000007241	mycb	2: 32016256 ~ 32018371 (+)
ENSDARG00000042114	bin1a	9: 7410798 ~ 7444753 (-)
ENSDARG00000010411	epn1	16: 12730311 ~ 12756528 (+)
ENSDARG00000019564	asap2b	20: 29634653 ~ 29675458 (+)
ENSDARG00000010434	clu	20: 39260475 ~ 39273987 (-)
ENSDARG00000077618	rin3	17: 33453689 ~ 33486030 (+)
ENSDARG00000089314	mapta	12: 4733892 ~ 4781821 (-)
ENSDARG00000014137	picalmb	15: 19726229 ~ 19772372 (-)
ENSDARG00000092238	or111-9	15: 31407840 ~ 31409013 (-)
ENSDARG00000013892	sorl1	15: 21541010 ~ 21669618 (-)
ENSDARG00000028625	jph2	23: 35721607 ~ 35756115 (-)
ENSDARG00000012866	picalma	10: 29137482 ~ 29225165 (+)
ENSDARG00000025011	synj1	10: 26515946 ~ 26569350 (+)
ENSDARG00000045695	myca	24: 10413484 ~ 10416284 (+)
ENSDARG00000042670	eps15l1a	22: 15912253 ~ 15957079 (-)
ENSDARG00000088388	NA	--
ENSDARG00000044591	NA	--
ENSDARG00000067989	NA	--
ENSDARG00000076591	NA	--
ENSDARG00000077521	NA	--
ENSDARG00000020270	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE115140 (cancer)	tumor	ST	cancer	adult, the ST sample sections from zebrafish melanoma tumors were obtained by sectioning the entire tumor with its surrounding	GSM3167486	GSE115140

After clicking the magnifying glass button, the expression information will be displayed below.

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000042114

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.