Fish Spatial Expression Database

GENE ID: ENSDARG00000089966

Symbol	Location	Gene type	Genome version	Species
si:zfos-1505d6.3	20: 54299419 ~ 54301276 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000089966 (si:zfos-1505d6.3), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000076476	zgc:173770	4: 77132096 ~ 77135076 (-)
ENSDARG00000068432	si:dkey-56m19.5	7: 44713135 ~ 44717498 (+)
ENSDARG00000079034	zpax4	7: 20577694 ~ 20582921 (-)
ENSDARG00000087166	figla	5: 13839316 ~ 13848296 (-)
ENSDARG00000074764	zgc:171426	3: 3469600 ~ 3481763 (+)
ENSDARG00000039828	zp3b	2: 6253246 ~ 6258796 (+)
ENSDARG00000038720	zp3f.1	2: 38282647 ~ 38284749 (-)
ENSDARG00000092090	si:ch211-125e6.12	9: 33216945 ~ 33218269 (+)
ENSDARG00000058409	hce2l1	9: 12894578 ~ 12903567 (+)
ENSDARG00000074286	hint3	16: 40024883 ~ 40031779 (+)
ENSDARG00000042129	zp3a.1	20: 33991801 ~ 33993698 (+)
ENSDARG00000042130	zp3a.2	20: 33987465 ~ 33989427 (+)
ENSDARG00000055365	si:dkey-25e12.3	20: 26543683 ~ 26551233 (-)
ENSDARG00000032431	mpv17	20: 38671894 ~ 38716529 (+)
ENSDARG00000019706	zar1	20: 23423814 ~ 23426339 (-)
ENSDARG00000089966	si:zfos-1505d6.3	20: 54299419 ~ 54301276 (+)
ENSDARG00000091409	zp2.6	20: 54304800 ~ 54306651 (+)
ENSDARG00000086352	zp2.1	20: 54309148 ~ 54310985 (+)
ENSDARG00000057138	zgc:174164	12: 11315849 ~ 11349899 (-)
ENSDARG00000092498	si:dkeyp-46h3.2	19: 27586823 ~ 27588842 (-)
ENSDARG00000063372	zpld1b	15: 19783352 ~ 19793361 (+)
ENSDARG00000006580	cldnd	21: 25777425 ~ 25778201 (+)
ENSDARG00000094392	si:dkey-229d11.5	21: 43644573 ~ 43666481 (-)
ENSDARG00000093353	si:ch211-263m18.4	21: 43653826 ~ 43656125 (-)
ENSDARG00000070709	wu:fi42e03	11: 29537756 ~ 29540033 (+)
ENSDARG00000088539	ponzr2	10: 22123831 ~ 22127942 (-)
ENSDARG00000088315	si:ch211-103f14.3	10: 29087810 ~ 29101849 (-)
ENSDARG00000026198	enoph1	10: 5025696 ~ 5037449 (+)
ENSDARG00000076949	zgc:173837	10: 19595009 ~ 19598009 (+)
ENSDARG00000068593	CU326366.2	10: 42887204 ~ 42898220 (-)
ENSDARG00000086221	si:ch211-226h8.4	22: 25184459 ~ 25185570 (+)
ENSDARG00000088923	si:ch211-12h2.8	22: 25611415 ~ 25612680 (-)
ENSDARG00000004199	spam1	25: 27531874 ~ 27541621 (-)
ENSDARG00000076366	NA	--
ENSDARG00000086340	NA	--
ENSDARG00000087209	NA	--
ENSDARG00000089352	NA	--
ENSDARG00000091737	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE158849 (embryo replicate1)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812175	GSE158849
GSE158849 (embryo replicate2)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812176	GSE158849
GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873
GSE59873 (shield, V to A)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole	GSM1448796	GSE59873
GSE59873 (shield, V to A, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole, replicate	GSM1448797	GSE59873
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
GSE59873 (shield, R to L)	embryo	baseline	shield stage, intact embryo, sectioned from right to left	GSM1448799	GSE59873
GSE59873 (shield, V to D)	embryo	baseline	shield stage, intact embryo, sectioned from ventral to dorsal end	GSM1448800	GSE59873
GSE59873 (shield, D to V)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end	GSM1448801	GSE59873
GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, A to P, replicate)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate	GSM1448804	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (3 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 3 days-post-cryoinjury	GSM1924887	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000089966

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.