Fish Spatial Expression Database

GENE ID: ENSDARG00000070206

Symbol	Location	Gene type	Genome version	Species
si:zfos-2070c2.1	8: 36377006 ~ 36387387 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000070206 (si:zfos-2070c2.1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000053709	si:ch73-89b15.3	4: 2267641 ~ 2290268 (+)
ENSDARG00000093687	si:dkey-193c22.1	5: 40200818 ~ 40210447 (-)
ENSDARG00000007836	ctsla	5: 44804791 ~ 44810920 (+)
ENSDARG00000011701	ctsll	5: 24305877 ~ 24309667 (+)
ENSDARG00000040251	ctsk	16: 29492749 ~ 29502787 (+)
ENSDARG00000074656	ctss2.1	16: 29509133 ~ 29513434 (+)
ENSDARG00000013771	ctss2.2	16: 29514473 ~ 29519977 (+)
ENSDARG00000009471	nid2b	20: 9643499 ~ 9674877 (-)
ENSDARG00000041705	si:busm1-228j01.6	8: 44373764 ~ 44378410 (-)
ENSDARG00000074510	mhc2bl	8: 36362898 ~ 36370595 (-)
ENSDARG00000070206	si:zfos-2070c2.1	8: 36377006 ~ 36387387 (-)
ENSDARG00000076307	si:zfos-2070c2.3	8: 36397818 ~ 36412936 (-)
ENSDARG00000104730	si:dkey-33b17.3	8: 36142734 ~ 36146191 (+)
ENSDARG00000055120	ctsba	17: 32622931 ~ 32631514 (+)
ENSDARG00000009087	cd74a	14: 3038473 ~ 3052361 (+)
ENSDARG00000052855	ctso	14: 36752033 ~ 36763302 (-)
ENSDARG00000063095	ctsf	14: 7140997 ~ 7164646 (+)
ENSDARG00000039150	lgmn	13: 36037970 ~ 36050327 (-)
ENSDARG00000071168	zmp:0000001138	13: 47803499 ~ 47810394 (-)
ENSDARG00000056330	mhc2dbb	18: 29922939 ~ 29925717 (-)
ENSDARG00000058492	si:dkey-30c15.17	18: 7363242 ~ 7374783 (+)
ENSDARG00000041108	ctsh	18: 26422124 ~ 26428525 (+)
ENSDARG00000095254	si:dkey-239j18.2	12: 16592408 ~ 16595406 (-)
ENSDARG00000039173	ctslb	12: 16617138 ~ 16619757 (-)
ENSDARG00000089806	si:dkey-239j18.3	12: 16634442 ~ 16636627 (-)
ENSDARG00000075527	zgc:174154	12: 16758972 ~ 16764751 (-)
ENSDARG00000095744	si:dkey-269i1.4	12: 16874645 ~ 16877136 (-)
ENSDARG00000094559	zgc:174855	12: 16938807 ~ 16941319 (-)
ENSDARG00000079376	zgc:174153	12: 16949391 ~ 16951851 (+)
ENSDARG00000088680	hhla2b.1	24: 25244946 ~ 25256670 (-)
ENSDARG00000054921	NA	--
ENSDARG00000088003	NA	--
ENSDARG00000090122	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (shield, V to D)	embryo	baseline	shield stage, intact embryo, sectioned from ventral to dorsal end	GSM1448800	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P, replicate)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate	GSM1448804	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (7 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 7 days-post-cryoinjury	GSM1924888	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000070206

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.