Fish Spatial Expression Database

GENE ID: ENSDARG00000008866

Symbol	Location	Gene type	Genome version	Species
cabp4	8: 13794785 ~ 13823098 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000008866 (cabp4), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000026855	cacna2d4a	4: 20271463 ~ 20292853 (-)
ENSDARG00000029524	impdh1b	4: 18960914 ~ 18985481 (+)
ENSDARG00000011259	trpm1a	7: 29312376 ~ 29341364 (-)
ENSDARG00000023759	zgc:73226	5: 6350328 ~ 6377865 (-)
ENSDARG00000059020	thap1	5: 431994 ~ 441090 (+)
ENSDARG00000058154	znf385c	3: 17744339 ~ 17860047 (+)
ENSDARG00000079665	gpr158b	2: 12104389 ~ 12243213 (-)
ENSDARG00000005544	btbd3a	1: 51191049 ~ 51197601 (+)
ENSDARG00000058803	grk1a	1: 245076 ~ 258138 (+)
ENSDARG00000061791	nyx	9: 33357011 ~ 33361199 (+)
ENSDARG00000076569	ndp	9: 33734850 ~ 33749556 (-)
ENSDARG00000031600	rd3	20: 13969414 ~ 13997835 (+)
ENSDARG00000088377	rp1l1b	20: 19119800 ~ 19148677 (+)
ENSDARG00000077187	impg1a	20: 778608 ~ 805245 (-)
ENSDARG00000042873	slc25a27	20: 36801804 ~ 36809059 (-)
ENSDARG00000021789	myoc	20: 15015557 ~ 15021628 (+)
ENSDARG00000010933	cacna1fa	8: 44850710 ~ 44868020 (-)
ENSDARG00000017742	grm6a	8: 8532407 ~ 8624008 (+)
ENSDARG00000008866	cabp4	8: 13794785 ~ 13823098 (-)
ENSDARG00000023683	cacna1fb	8: 22851472 ~ 22927224 (+)
ENSDARG00000074839	impg1b	17: 36627099 ~ 36681740 (+)
ENSDARG00000055463	lrit3a	14: 36328425 ~ 36345175 (-)
ENSDARG00000057054	lrit3b	13: 12591508 ~ 12602920 (-)
ENSDARG00000041431	slc24a1	18: 19006063 ~ 19039960 (+)
ENSDARG00000075067	aipl1	15: 24873388 ~ 24884784 (-)
ENSDARG00000076153	lca5	23: 31380607 ~ 31400792 (-)
ENSDARG00000045904	nr2e3	25: 22274642 ~ 22278655 (+)
ENSDARG00000023886	cacna2d4b	25: 19023737 ~ 19090628 (-)
ENSDARG00000025612	NA	--
ENSDARG00000028476	NA	--
ENSDARG00000031047	NA	--
ENSDARG00000058525	NA	--
ENSDARG00000060750	NA	--
ENSDARG00000068636	NA	--
ENSDARG00000075712	NA	--
ENSDARG00000090068	NA	--
ENSDARG00000059416	NA	--
ENSDARG00000076643	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate2)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812176	GSE158849

shield stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873

15 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
	GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
	GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000008866

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.