Fish Spatial Expression Database

GENE ID: ENSDARG00000073720

Symbol	Location	Gene type	Genome version	Species
NA	8: 31923858 ~ 31938364 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000073720 (NA), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000045095	elac1	5: 6854345 ~ 6864127 (+)
ENSDARG00000035163	tlcd5b	5: 58836354 ~ 58840971 (-)
ENSDARG00000059743	tmem98	3: 39099716 ~ 39110228 (+)
ENSDARG00000052642	shisa9b	3: 46043406 ~ 46115232 (-)
ENSDARG00000079679	cep112	3: 55684449 ~ 56030117 (-)
ENSDARG00000079446	NA	6: 48618512 ~ 48689598 (+)
ENSDARG00000074776	tmem154	1: 25154076 ~ 25177225 (-)
ENSDARG00000079973	pus10	1: 53714734 ~ 53730536 (+)
ENSDARG00000011602	NA	20: 25659839 ~ 25709349 (-)
ENSDARG00000088929	ypel5	20: 113949 ~ 116999 (-)
ENSDARG00000019417	gadd45ga	8: 31367667 ~ 31369161 (-)
ENSDARG00000074087	nim1k	8: 31387563 ~ 31403948 (-)
ENSDARG00000073720	NA	8: 31923858 ~ 31938364 (-)
ENSDARG00000044011	xkrx	14: 41318412 ~ 41341284 (+)
ENSDARG00000062721	dennd4a	18: 19044839 ~ 19103929 (-)
ENSDARG00000045145	shisa9a	12: 19792281 ~ 19865585 (-)
ENSDARG00000045038	tekt3	12: 37327867 ~ 37343858 (-)
ENSDARG00000024920	tlcd5a	15: 22435460 ~ 22444746 (+)
ENSDARG00000058212	ndnl2	23: 12897878 ~ 12913131 (-)
ENSDARG00000032296	pomp	21: 40712757 ~ 40717678 (-)
ENSDARG00000063161	ppwd1	10: 11767791 ~ 11788565 (+)
ENSDARG00000033508	NA	--
ENSDARG00000079660	NA	--
ENSDARG00000088011	NA	--
ENSDARG00000089411	NA	--

There is no GO result!

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

15 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873

late embryo

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.