Fish Spatial Expression Database

GENE ID: ENSDARG00000005776

Symbol	Location	Gene type	Genome version	Species
guk1b	8: 18230948 ~ 18239498 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000005776 (guk1b), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000061301	gmpr2	7: 24196575 ~ 24204665 (-)
ENSDARG00000020473	hddc3	7: 50395002 ~ 50397968 (+)
ENSDARG00000012504	rlbp1a	7: 13867722 ~ 13884610 (-)
ENSDARG00000075395	dguok	5: 69702602 ~ 69707794 (-)
ENSDARG00000011989	crx	5: 36932718 ~ 36936443 (+)
ENSDARG00000088390	nme4	3: 15068321 ~ 15082475 (-)
ENSDARG00000010680	gngt2a	3: 23092762 ~ 23096141 (+)
ENSDARG00000012192	cant1a	3: 57747716 ~ 57765169 (-)
ENSDARG00000056193	nme7	6: 29227489 ~ 29288155 (-)
ENSDARG00000044199	gnat1	6: 42918933 ~ 42930302 (+)
ENSDARG00000011824	pbxip1b	16: 22750174 ~ 22775528 (-)
ENSDARG00000057529	itpa	20: 14941264 ~ 14949443 (+)
ENSDARG00000016138	nme6	20: 19562383 ~ 19575565 (+)
ENSDARG00000017634	pdcb	20: 34084331 ~ 34090740 (-)
ENSDARG00000020711	rrm2	20: 29492469 ~ 29499426 (-)
ENSDARG00000042529	gnat2	8: 25225590 ~ 25247284 (-)
ENSDARG00000005776	guk1b	8: 18230948 ~ 18239498 (-)
ENSDARG00000008757	entpd6	17: 21102301 ~ 21123575 (+)
ENSDARG00000008884	hprt1	14: 31509922 ~ 31521543 (+)
ENSDARG00000041617	nme5	14: 6954579 ~ 6961746 (+)
ENSDARG00000079848	gmps	18: 34181655 ~ 34216886 (+)
ENSDARG00000043820	nme2a	12: 20788243 ~ 20796658 (-)
ENSDARG00000016160	gmpr	19: 32472996 ~ 32487469 (-)
ENSDARG00000002696	gnb3b	19: 5106226 ~ 5135345 (-)
ENSDARG00000071015	pbxip1a	19: 7549854 ~ 7567229 (+)
ENSDARG00000009637	rcvrn3	19: 10339538 ~ 10352579 (+)
ENSDARG00000033367	rrm2b	19: 32916372 ~ 32928486 (-)
ENSDARG00000027495	elovl4b	23: 40410644 ~ 40438581 (+)
ENSDARG00000014017	rrm1	21: 30772043 ~ 30787414 (-)
ENSDARG00000044807	dck	21: 5974590 ~ 5986172 (+)
ENSDARG00000056511	arr3a	10: 26800213 ~ 26811397 (+)
ENSDARG00000014866	hprt1l	25: 37073189 ~ 37084032 (-)
ENSDARG00000016398	NA	--
ENSDARG00000057904	NA	--
ENSDARG00000076892	NA	--
ENSDARG00000078461	NA	--
ENSDARG00000051983	NA	--
ENSDARG00000076706	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

15 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (7 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 7 days-post-cryoinjury	GSM1924888	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000005776

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.