Fish Spatial Expression Database

GENE ID: ENSDARG00000091471

Symbol	Location	Gene type	Genome version	Species
ccdc28a	17: 33388899 ~ 33412868 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000091471 (ccdc28a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000090052	si:dkey-165a24.9	7: 22702224 ~ 22712827 (+)
ENSDARG00000060415	arhgef28a	5: 34827614 ~ 34964830 (-)
ENSDARG00000089856	cita	5: 2409554 ~ 2636078 (-)
ENSDARG00000054026	mustn1a	6: 40841156 ~ 40842768 (-)
ENSDARG00000058638	si:ch211-71m22.1	2: 8586415 ~ 8611675 (-)
ENSDARG00000039152	fbxo36b	2: 16482338 ~ 16485408 (+)
ENSDARG00000059682	slc43a3a	1: 44141758 ~ 44161417 (-)
ENSDARG00000062606	si:dkey-26i13.8	1: 11711226 ~ 11733130 (+)
ENSDARG00000007477	fbxo8	1: 38346043 ~ 38361496 (-)
ENSDARG00000055934	si:ch1073-416j23.1	9: 10781687 ~ 10805231 (-)
ENSDARG00000042627	nhsl1b	20: 30725778 ~ 30889820 (+)
ENSDARG00000091471	ccdc28a	17: 33388899 ~ 33412868 (-)
ENSDARG00000022983	ccdc28a	17: 33409038 ~ 33416020 (-)
ENSDARG00000054537	nhsl1a	17: 30522764 ~ 30591223 (+)
ENSDARG00000071259	fbxo34	17: 10783599 ~ 10813885 (-)
ENSDARG00000006924	fbxo38	14: 38656776 ~ 38690871 (+)
ENSDARG00000027159	fbxo28	13: 482911 ~ 490569 (+)
ENSDARG00000062855	plekhg7	18: 15887830 ~ 15932704 (-)
ENSDARG00000088130	si:dkey-30c15.10	18: 7425222 ~ 7448047 (-)
ENSDARG00000034941	si:dkey-224e22.2	18: 44746594 ~ 44765515 (+)
ENSDARG00000056639	carmil2	18: 22302635 ~ 22396371 (+)
ENSDARG00000074121	dnmbp	12: 31638045 ~ 31710590 (+)
ENSDARG00000086484	fbxw10	12: 36524084 ~ 36534476 (+)
ENSDARG00000077227	fbxl6	19: 22347627 ~ 22363292 (+)
ENSDARG00000007722	nudt8	15: 499848 ~ 506010 (-)
ENSDARG00000015460	racgap1	23: 33757173 ~ 33775309 (-)
ENSDARG00000074184	arhgap32b	21: 24539896 ~ 24632778 (-)
ENSDARG00000017230	fbxw11b	10: 21444654 ~ 21470593 (+)
ENSDARG00000042308	arhgef18b	22: 10814204 ~ 10891213 (-)
ENSDARG00000087545	fbxo42	22: 191931 ~ 193234 (-)
ENSDARG00000005642	NA	--
ENSDARG00000028543	NA	--
ENSDARG00000088052	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE115140 (cancer)	tumor	ST	cancer	adult, the ST sample sections from zebrafish melanoma tumors were obtained by sectioning the entire tumor with its surrounding	GSM3167486	GSE115140

After clicking the magnifying glass button, the expression information will be displayed below.

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, V to A)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole	GSM1448796	GSE59873
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, A to P, replicate)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate	GSM1448804	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350
cvab004 (S3)	heart	baseline	late embryo, 1.08dpf, untreatment	S3	cvab004
cvab004 (S5)	heart	baseline	late embryo, 1.08dpf, untreatment	S5	cvab004

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000091471

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.