Fish Spatial Expression Database

GENE ID: ENSDARG00000024167

Symbol	Location	Gene type	Genome version	Species
kcnh1a	17: 25677458 ~ 25765938 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000024167 (kcnh1a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000057468	kcnc2	4: 2060524 ~ 2196928 (-)
ENSDARG00000045837	si:dkey-14d8.20	4: 5392094 ~ 5494298 (+)
ENSDARG00000032799	kcnd2	4: 10365857 ~ 10562174 (+)
ENSDARG00000078650	kcna4	7: 32595981 ~ 32599669 (-)
ENSDARG00000096241	ighv7-1	3: 34076378 ~ 34076807 (-)
ENSDARG00000096430	ighv9-1	3: 34069166 ~ 34069637 (-)
ENSDARG00000006522	otop2	3: 56905103 ~ 56918442 (+)
ENSDARG00000096388	ighv5-3	3: 34098259 ~ 34098731 (-)
ENSDARG00000096345	ighv4-5	3: 34096513 ~ 34096987 (-)
ENSDARG00000015964	zgc:153311	6: 30484005 ~ 30485009 (-)
ENSDARG00000040741	kcnab1b	2: 44426609 ~ 44510752 (+)
ENSDARG00000038862	kcnb2	2: 30144979 ~ 30177469 (+)
ENSDARG00000069953	kcnq5b	1: 31134942 ~ 31350148 (-)
ENSDARG00000077165	kcnj3a	9: 4478199 ~ 4511613 (-)
ENSDARG00000012269	clcn1b	16: 17477152 ~ 17541890 (-)
ENSDARG00000070092	NA	16: 40991911 ~ 41004731 (-)
ENSDARG00000061288	kcnc4	8: 24928632 ~ 24965308 (-)
ENSDARG00000056101	kcnd3	8: 28065803 ~ 28232817 (+)
ENSDARG00000074746	kcnd1	8: 9866351 ~ 9986978 (+)
ENSDARG00000024167	kcnh1a	17: 25677458 ~ 25765938 (+)
ENSDARG00000006891	kcns3a	13: 32575777 ~ 32577386 (-)
ENSDARG00000008140	kcnab1a	18: 34362608 ~ 34536067 (+)
ENSDARG00000041379	si:ch211-245j22.3	18: 15554381 ~ 15559817 (-)
ENSDARG00000061622	kcng3	12: 25209369 ~ 25217217 (-)
ENSDARG00000062084	clcn1a	19: 9612163 ~ 9662958 (-)
ENSDARG00000062699	nkain4	23: 14265122 ~ 14403939 (-)
ENSDARG00000062134	kcnab2b	23: 21067389 ~ 21114732 (+)
ENSDARG00000087247	kcnab2a	11: 41540862 ~ 41699904 (+)
ENSDARG00000076644	kcnv2a	10: 15310811 ~ 15314151 (+)
ENSDARG00000077622	si:ch211-263p13.7	10: 26813710 ~ 26822190 (+)
ENSDARG00000062942	kcna1a	25: 19954576 ~ 19958278 (+)
ENSDARG00000029916	NA	--
ENSDARG00000036815	NA	--
ENSDARG00000079491	NA	--
ENSDARG00000037933	NA	--
ENSDARG00000062659	NA	--
ENSDARG00000063282	NA	--
ENSDARG00000088397	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE115140 (cancer)	tumor	ST	cancer	adult, the ST sample sections from zebrafish melanoma tumors were obtained by sectioning the entire tumor with its surrounding	GSM3167486	GSE115140

After clicking the magnifying glass button, the expression information will be displayed below.

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873
GSE59873 (shield, V to A)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole	GSM1448796	GSE59873
GSE59873 (shield, V to A, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole, replicate	GSM1448797	GSE59873
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
GSE59873 (shield, R to L)	embryo	baseline	shield stage, intact embryo, sectioned from right to left	GSM1448799	GSE59873
GSE59873 (shield, D to V)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end	GSM1448801	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (7 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 7 days-post-cryoinjury	GSM1924888	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000024167

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.