Fish Spatial Expression Database

GENE ID: ENSDARG00000090381

Symbol	Location	Gene type	Genome version	Species
NA	17: 2348540 ~ 2386569 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000090381 (NA), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000075800	calml4a	7: 34492744 ~ 34496196 (+)
ENSDARG00000068246	plcb3	7: 60255852 ~ 60351876 (-)
ENSDARG00000036058	gnao1b	7: 29133321 ~ 29144547 (+)
ENSDARG00000060946	pip5kl1	5: 31693316 ~ 31712399 (-)
ENSDARG00000011487	gnaq	5: 55588389 ~ 55600689 (-)
ENSDARG00000013649	casr	5: 67768162 ~ 67783593 (-)
ENSDARG00000035178	gna14	5: 55543580 ~ 55560937 (-)
ENSDARG00000033160	nr1d1	3: 23488652 ~ 23496223 (+)
ENSDARG00000063544	pip4k2ab	2: 21090317 ~ 21156855 (+)
ENSDARG00000053326	gna11b	2: 52469854 ~ 52550135 (-)
ENSDARG00000019278	NA	2: 5300405 ~ 5311253 (+)
ENSDARG00000024740	gng13a	1: 9227081 ~ 9228007 (-)
ENSDARG00000024642	pip5k1ab	16: 9726038 ~ 9761973 (+)
ENSDARG00000007582	olfcb1	20: 98179 ~ 106012 (+)
ENSDARG00000006508	pip5k1bb	8: 11234168 ~ 11324143 (-)
ENSDARG00000025013	gna14a	8: 51958968 ~ 51986997 (+)
ENSDARG00000061741	itpr3	8: 21254192 ~ 21353035 (+)
ENSDARG00000090381	NA	17: 2348540 ~ 2386569 (-)
ENSDARG00000056831	gng2	13: 12045475 ~ 12088835 (+)
ENSDARG00000031427	calm2a	13: 8777633 ~ 8785610 (-)
ENSDARG00000016676	gnao1a	18: 22793465 ~ 22975655 (+)
ENSDARG00000055377	gnb5b	18: 39067575 ~ 39105519 (+)
ENSDARG00000031020	pip4k2ca	23: 36616717 ~ 36645135 (+)
ENSDARG00000091637	pip4k2cb	11: 2398843 ~ 2413107 (+)
ENSDARG00000003776	pip4k2aa	24: 17068724 ~ 17127833 (+)
ENSDARG00000071416	gna15.4	22: 21950838 ~ 21957192 (+)
ENSDARG00000016364	gna15.1	22: 22021936 ~ 22036307 (+)
ENSDARG00000076001	pip5k1ca	22: 17543607 ~ 17586112 (-)
ENSDARG00000059347	calml4b	25: 1266945 ~ 1323928 (-)
ENSDARG00000002614	NA	--
ENSDARG00000034480	NA	--
ENSDARG00000021065	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate2)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812176	GSE158849
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (shield, D to V)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end	GSM1448801	GSE59873
	GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
	GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000090381

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.