Fish Spatial Expression Database

GENE ID: ENSDARG00000059083

Symbol	Location	Gene type	Genome version	Species
ppp2r5ca	17: 956821 ~ 981781 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000059083 (ppp2r5ca), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000017661	braf	4: 12074776 ~ 12102036 (-)
ENSDARG00000014804	cacna2d1a	4: 19768679 ~ 19884440 (-)
ENSDARG00000035350	ins	5: 37854685 ~ 37857696 (+)
ENSDARG00000007791	ppp2r1ba	5: 57773222 ~ 57798096 (+)
ENSDARG00000054533	araf	5: 26856253 ~ 26869392 (+)
ENSDARG00000052966	nmt1a	3: 39238096 ~ 39259919 (-)
ENSDARG00000062174	cacnb4b	6: 14086688 ~ 14146979 (-)
ENSDARG00000005941	clul1	2: 31271082 ~ 31364659 (+)
ENSDARG00000011948	insra	2: 37544951 ~ 37632896 (-)
ENSDARG00000095949	si:dkey-22i16.9	1: 43973880 ~ 43983405 (-)
ENSDARG00000087205	akt3b	1: 53735195 ~ 53756851 (-)
ENSDARG00000009738	cacnb4a	9: 38074082 ~ 38130085 (+)
ENSDARG00000040059	gbp	16: 40954481 ~ 40955839 (+)
ENSDARG00000041980	calhm6	16: 32226664 ~ 32233463 (-)
ENSDARG00000007783	blk	20: 19175031 ~ 19198334 (+)
ENSDARG00000026630	mark3b	20: 43792866 ~ 43917689 (-)
ENSDARG00000075758	ywhabb	8: 45418985 ~ 45430942 (-)
ENSDARG00000059083	ppp2r5ca	17: 956821 ~ 981781 (+)
ENSDARG00000076667	ccng1	14: 22129096 ~ 22140213 (+)
ENSDARG00000030224	ppp2ca	14: 49118860 ~ 49133426 (-)
ENSDARG00000011219	akt2	18: 40711188 ~ 40753583 (-)
ENSDARG00000070479	tspan13b	19: 30387999 ~ 30399876 (+)
ENSDARG00000093668	ankmy2b	19: 31043002 ~ 31054326 (+)
ENSDARG00000086931	CABZ01029822.1	19: 6856589 ~ 6873107 (-)
ENSDARG00000088251	lgals17	15: 17059622 ~ 17074393 (-)
ENSDARG00000032430	ppp2r1bb	15: 21744680 ~ 21772839 (+)
ENSDARG00000001881	cacnb3a	23: 14097508 ~ 14180307 (+)
ENSDARG00000053404	NA	21: 45351660 ~ 45363956 (-)
ENSDARG00000026797	NA	--
ENSDARG00000053020	NA	--
ENSDARG00000059282	NA	--
ENSDARG00000088905	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE115140 (cancer)	tumor	ST	cancer	adult, the ST sample sections from zebrafish melanoma tumors were obtained by sectioning the entire tumor with its surrounding	GSM3167486	GSE115140

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

10 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
	GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000059083

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.