Fish Spatial Expression Database

GENE ID: ENSDARG00000076563

Symbol	Location	Gene type	Genome version	Species
rarres3l	14: 45565891 ~ 45573222 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000076563 (rarres3l), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000014572	chpt1	4: 17707008 ~ 17725008 (-)
ENSDARG00000059003	strip2	4: 4971042 ~ 5019113 (-)
ENSDARG00000034262	pld2	5: 38388443 ~ 38438613 (-)
ENSDARG00000052462	pisd	5: 57489253 ~ 57528943 (-)
ENSDARG00000042090	si:ch73-55i23.1	5: 1911814 ~ 1923875 (+)
ENSDARG00000033355	zgc:101699	5: 1877464 ~ 1901838 (+)
ENSDARG00000038296	tmem86b	3: 16762483 ~ 16770318 (+)
ENSDARG00000056228	pld1a	2: 25560556 ~ 25632090 (+)
ENSDARG00000010773	pnpla6	1: 45866692 ~ 45920632 (-)
ENSDARG00000070454	pla2g12a	1: 12061284 ~ 12064799 (-)
ENSDARG00000012588	ptdss1a	16: 53278406 ~ 53302453 (+)
ENSDARG00000091633	si:dkey-177p2.18	20: 27003558 ~ 27012959 (+)
ENSDARG00000094088	si:ch211-229n2.7	8: 14085894 ~ 14091886 (-)
ENSDARG00000092122	si:ch211-229n2.6	8: 14096167 ~ 14104317 (-)
ENSDARG00000058716	cept1a	8: 12951155 ~ 12969237 (+)
ENSDARG00000096445	si:ch211-214p16.3	17: 25649939 ~ 25737452 (-)
ENSDARG00000093006	rarres3	14: 45559268 ~ 45564908 (+)
ENSDARG00000076563	rarres3l	14: 45565891 ~ 45573222 (+)
ENSDARG00000040469	enpp6	14: 4047215 ~ 4076480 (-)
ENSDARG00000068199	pld3	18: 46263169 ~ 46295132 (-)
ENSDARG00000006944	gdpd3b	12: 3893032 ~ 3904011 (-)
ENSDARG00000053656	lypla2	19: 43884120 ~ 43901467 (+)
ENSDARG00000069823	proca1	15: 15445113 ~ 15449929 (-)
ENSDARG00000060484	selenoi	23: 31000243 ~ 31022418 (+)
ENSDARG00000008948	pla2g3	10: 3520256 ~ 3532997 (+)
ENSDARG00000057125	pld1b	24: 26659010 ~ 26715174 (-)
ENSDARG00000021177	cept1b	22: 866681 ~ 881725 (-)
ENSDARG00000019532	fads2	25: 4133488 ~ 4148719 (-)
ENSDARG00000036114	NA	--
ENSDARG00000040450	NA	--
ENSDARG00000062375	NA	--
ENSDARG00000063147	NA	--
ENSDARG00000075162	NA	--
ENSDARG00000091765	NA	--
ENSDARG00000036713	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE158849 (embryo replicate1)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812175	GSE158849
GSE158849 (embryo replicate2)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812176	GSE158849
GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P, replicate)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate	GSM1448804	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350
cvab004 (S2)	heart	baseline	late embryo, 1.08dpf, untreatment	S2	cvab004

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (3 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 3 days-post-cryoinjury	GSM1924887	GSE74652
	GSE74652 (7 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 7 days-post-cryoinjury	GSM1924888	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000076563

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.