Fish Spatial Expression Database

GENE ID: ENSDARG00000074036

Symbol	Location	Gene type	Genome version	Species
ky	13: 13743202 ~ 13754091 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000074036 (ky), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000045560	mybpc1	4: 17726841 ~ 17793152 (-)
ENSDARG00000053568	pstpip1b	7: 30051488 ~ 30067228 (+)
ENSDARG00000060010	iqgap2	5: 46077710 ~ 46196708 (+)
ENSDARG00000077737	spsb3a	3: 16018202 ~ 16039619 (-)
ENSDARG00000074443	gas7a	3: 50310684 ~ 50420221 (+)
ENSDARG00000097897	sgip1a	6: 30709926 ~ 30839763 (-)
ENSDARG00000042983	has1	16: 24940377 ~ 24945337 (-)
ENSDARG00000041490	afp4	16: 45904153 ~ 45910050 (-)
ENSDARG00000040278	klhl38b	16: 25245857 ~ 25250414 (+)
ENSDARG00000077559	LO017815.1	16: 55059026 ~ 55074006 (+)
ENSDARG00000015356	fcho1	8: 20037368 ~ 20072776 (+)
ENSDARG00000068515	chs1	13: 285874 ~ 303137 (-)
ENSDARG00000074036	ky	13: 13743202 ~ 13754091 (-)
ENSDARG00000060860	pstpip1a	18: 26930956 ~ 26963473 (-)
ENSDARG00000094415	si:ch211-264e16.2	18: 15683157 ~ 15693240 (+)
ENSDARG00000068947	si:ch211-264e16.1	18: 15706160 ~ 15718931 (+)
ENSDARG00000068951	si:ch211-219a15.4	18: 15758375 ~ 15768336 (+)
ENSDARG00000031383	klhl38a	19: 33084066 ~ 33087246 (-)
ENSDARG00000036695	calcoco1a	23: 35981839 ~ 36003441 (-)
ENSDARG00000089569	pstpip2	10: 8101729 ~ 8142213 (+)
ENSDARG00000075463	mss51	24: 39105051 ~ 39114123 (+)
ENSDARG00000077487	spsb3b	24: 39186940 ~ 39196916 (+)
ENSDARG00000057159	ankrd29	22: 16418688 ~ 16431139 (+)
ENSDARG00000045612	lrrc10	25: 28672539 ~ 28674739 (-)
ENSDARG00000053443	NA	--
ENSDARG00000074924	NA	--
ENSDARG00000077269	NA	--
ENSDARG00000088969	NA	--
ENSDARG00000086662	NA	--
ENSDARG00000089630	NA	--
ENSDARG00000089669	NA	--
ENSDARG00000089999	NA	--
ENSDARG00000091350	NA	--
ENSDARG00000094040	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate1)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812175	GSE158849
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

10 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873

late embryo

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000074036

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.