Fish Spatial Expression Database

GENE ID: ENSDARG00000007561

Symbol	Location	Gene type	Genome version	Species
cdh23	13: 43050562 ~ 43213012 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000007561 (cdh23), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000069431	slc26a4	4: 18782539 ~ 18796539 (+)
ENSDARG00000020924	myo1ca	5: 37785152 ~ 37817140 (+)
ENSDARG00000030311	tmc2b	5: 25624819 ~ 25645593 (-)
ENSDARG00000056386	NA	5: 25652727 ~ 25668787 (-)
ENSDARG00000021137	adgrv1	5: 48683447 ~ 48940127 (+)
ENSDARG00000075292	myo15aa	3: 40056485 ~ 40136743 (-)
ENSDARG00000004322	ush1ga	3: 56882832 ~ 56896702 (-)
ENSDARG00000069423	tmie	2: 2223837 ~ 2279311 (+)
ENSDARG00000042707	cx30.3	9: 21401189 ~ 21405066 (+)
ENSDARG00000030832	otofa	20: 31076488 ~ 31212556 (+)
ENSDARG00000076414	espn	8: 46939391 ~ 47088528 (+)
ENSDARG00000056458	lhfpl5b	8: 23876928 ~ 23885016 (-)
ENSDARG00000070145	magi1a	8: 54055390 ~ 54072665 (+)
ENSDARG00000029482	ush2a	17: 29376854 ~ 29771639 (-)
ENSDARG00000042141	myo6b	17: 36687094 ~ 36842267 (-)
ENSDARG00000054302	ehd4	17: 29195962 ~ 29213710 (-)
ENSDARG00000069865	grxcr1b	13: 9440326 ~ 9442942 (-)
ENSDARG00000076974	pdzd7a	13: 18701906 ~ 18783485 (+)
ENSDARG00000007561	cdh23	13: 43050562 ~ 43213012 (+)
ENSDARG00000008849	ptprq	18: 6319447 ~ 6406609 (+)
ENSDARG00000076079	ush1gb	12: 46582168 ~ 46598223 (+)
ENSDARG00000071601	pvalb9	12: 17695986 ~ 17698669 (-)
ENSDARG00000071772	si:ch211-253p2.2	12: 6542789 ~ 6551681 (-)
ENSDARG00000008127	pcdh15b	12: 6566233 ~ 6905375 (-)
ENSDARG00000020176	zbtb22a	19: 192741 ~ 205104 (-)
ENSDARG00000061579	myo1cb	15: 28268135 ~ 28352897 (+)
ENSDARG00000044632	myo7ab	21: 22237964 ~ 22309466 (+)
ENSDARG00000075362	whrna	21: 13979033 ~ 14175838 (-)
ENSDARG00000077778	adamts9	11: 19157879 ~ 19227802 (+)
ENSDARG00000045023	lhfpl5a	11: 2829812 ~ 2838699 (-)
ENSDARG00000051876	ush1c	25: 22643954 ~ 22704233 (+)
ENSDARG00000032626	NA	--
ENSDARG00000042863	NA	--
ENSDARG00000052232	NA	--
ENSDARG00000076722	NA	--
ENSDARG00000078845	NA	--
ENSDARG00000061277	NA	--
ENSDARG00000061937	NA	--
ENSDARG00000089584	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate2)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812176	GSE158849
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
GSE59873 (shield, R to L)	embryo	baseline	shield stage, intact embryo, sectioned from right to left	GSM1448799	GSE59873
GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
	GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000007561

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.