Fish Spatial Expression Database

GENE ID: ENSDARG00000057728

Symbol	Location	Gene type	Genome version	Species
slc17a8	18: 15616167 ~ 15635407 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000057728 (slc17a8), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000022424	slc26a5	4: 14932537 ~ 14954327 (-)
ENSDARG00000023394	slc37a2	5: 58455488 ~ 58483036 (+)
ENSDARG00000059775	slc32a1	6: 60142619 ~ 60147517 (-)
ENSDARG00000086104	slco5a1a	2: 42382472 ~ 42415902 (-)
ENSDARG00000018534	slc6a9	2: 33335911 ~ 33422798 (+)
ENSDARG00000062854	sdk1b	1: 11124746 ~ 11519934 (-)
ENSDARG00000074254	abcb6b	9: 14202686 ~ 14273652 (-)
ENSDARG00000030832	otofa	20: 31076488 ~ 31212556 (+)
ENSDARG00000077367	ntng2a	8: 11993150 ~ 12111461 (+)
ENSDARG00000042141	myo6b	17: 36687094 ~ 36842267 (-)
ENSDARG00000020581	otofb	17: 50313650 ~ 50374005 (-)
ENSDARG00000015110	slc18a2	17: 23782324 ~ 23811332 (+)
ENSDARG00000052277	cabp2b	14: 46223458 ~ 46301887 (+)
ENSDARG00000075735	cxxc5b	14: 7932973 ~ 7967428 (+)
ENSDARG00000015854	chata	13: 29406814 ~ 29421331 (-)
ENSDARG00000006356	slc18a3a	13: 29422049 ~ 29424454 (-)
ENSDARG00000091293	dmxl2	18: 39669255 ~ 39787040 (-)
ENSDARG00000057728	slc17a8	18: 15616167 ~ 15635407 (+)
ENSDARG00000062817	crym	12: 10448226 ~ 10462503 (+)
ENSDARG00000060452	sdk2b	12: 37463513 ~ 37734973 (-)
ENSDARG00000036773	s100s	19: 7595924 ~ 7609286 (+)
ENSDARG00000087100	ntng2b	21: 3979107 ~ 4032650 (-)
ENSDARG00000075698	nkpd1	11: 33284837 ~ 33291898 (+)
ENSDARG00000062471	tafa4b	11: 17596979 ~ 17713987 (-)
ENSDARG00000077596	phf24	10: 17850934 ~ 17926298 (+)
ENSDARG00000015537	gad2	24: 6133147 ~ 6158933 (-)
ENSDARG00000071685	slco5a1a	24: 19591893 ~ 19697446 (+)
ENSDARG00000058015	ano3	25: 35375848 ~ 35468555 (+)
ENSDARG00000045802	hapln3	25: 19201231 ~ 19205875 (+)
ENSDARG00000024004	NA	--
ENSDARG00000075712	NA	--
ENSDARG00000057052	NA	--
ENSDARG00000090189	NA	--
ENSDARG00000095506	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate2)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812176	GSE158849
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (shield, V to A, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole, replicate	GSM1448797	GSE59873
	GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000057728

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.