Symbol | Location | Gene type | Genome version | Species |
---|---|---|---|---|
six3b | 12: 25600685 ~ 25603341 (+) | protein_coding | GRCz11 | Danio rerio |
Gene ID | Symbol | Location |
---|---|---|
ENSDARG00000068567 | shha | 7: 40884012 ~ 40893295 (+) |
ENSDARG00000045936 | pax6b | 7: 15871156 ~ 15900606 (+) |
ENSDARG00000058379 | otpb | 5: 51615025 ~ 51619742 (-) |
ENSDARG00000002933 | gbx2 | 6: 16031189 ~ 16034286 (+) |
ENSDARG00000040321 | rx2 | 2: 55833425 ~ 55861351 (-) |
ENSDARG00000030703 | otx2a | 1: 50921266 ~ 50929957 (+) |
ENSDARG00000037178 | zic2b | 1: 29831759 ~ 29860895 (+) |
ENSDARG00000015554 | zic2a | 9: 31282161 ~ 31287010 (+) |
ENSDARG00000031222 | lhx2b | 8: 3085120 ~ 3101392 (+) |
ENSDARG00000062892 | foxe3 | 8: 19668654 ~ 19670305 (+) |
ENSDARG00000019835 | nkx2.1 | 17: 38262408 ~ 38264625 (+) |
ENSDARG00000011235 | otx2b | 17: 44244659 ~ 44249720 (-) |
ENSDARG00000094992 | otx1 | 17: 24318753 ~ 24324415 (+) |
ENSDARG00000005574 | vsx2 | 17: 31652640 ~ 31659670 (-) |
ENSDARG00000021916 | vax1 | 17: 21432693 ~ 21441464 (-) |
ENSDARG00000070769 | foxg1a | 17: 29117027 ~ 29119362 (-) |
ENSDARG00000020417 | emx3 | 14: 26363537 ~ 26377044 (-) |
ENSDARG00000070069 | pitx3 | 13: 7555720 ~ 7575216 (-) |
ENSDARG00000069552 | atoh7 | 13: 25449681 ~ 25450725 (+) |
ENSDARG00000039701 | emx2 | 13: 19322686 ~ 19327657 (+) |
ENSDARG00000028148 | pax2a | 13: 29770837 ~ 29805529 (+) |
ENSDARG00000054879 | six3b | 12: 25600685 ~ 25603341 (+) |
ENSDARG00000035957 | gmnn | 19: 31541607 ~ 31592425 (+) |
ENSDARG00000012397 | eya4 | 23: 31439713 ~ 31512497 (-) |
ENSDARG00000052893 | rx3 | 21: 10756154 ~ 10759223 (+) |
ENSDARG00000014201 | otpa | 21: 7582036 ~ 7586992 (+) |
ENSDARG00000059337 | tgif1 | 24: 9287409 ~ 9300160 (-) |
ENSDARG00000014259 | eya1 | 24: 13869092 ~ 14015459 (+) |
ENSDARG00000071684 | rx1 | 22: 4997784 ~ 5006801 (-) |
ENSDARG00000071394 | foxq2 | 22: 20427170 ~ 20429374 (+) |
ENSDARG00000070913 | sox2 | 22: 37347896 ~ 37349967 (-) |
ENSDARG00000054509 | NA | -- |
ENSDARG00000045045 | NA | -- |
ENSDARG00000052947 | NA | -- |
ENSDARG00000010461 | NA | -- |
Dataset ID | Tissue / organ | Technique | Experiment type | Sample description | Source dataset ID | Project ID | |
---|---|---|---|---|---|---|---|
GSE115140 (cancer) | tumor | ST | cancer | adult, the ST sample sections from zebrafish melanoma tumors were obtained by sectioning the entire tumor with its surrounding | GSM3167486
|
GSE115140 |
Dataset ID | Tissue / organ | Technique | Experiment type | Sample description | Source dataset ID | Project ID | |
---|---|---|---|---|---|---|---|
GSE120581 (tail replicate1) | tail | Geo-seq | baseline | late embryo, 2.3dpf, the tails of embryos, untreatment | GSM3402086-GSM3402121
|
GSE120581 | |
GSE120581 (tail replicate2) | tail | Geo-seq | baseline | late embryo, 2.3dpf, the tails of embryos, untreatment | GSM3402122-GSM3402157
|
GSE120581 |
Dataset ID | Tissue / organ | Experiment type | Sample description | Source dataset ID | Project ID | |
---|---|---|---|---|---|---|
GSE158849 (embryo replicate2) | embryo | baseline | one-cell stage, 0.3hpf, untreatment | GSM4812176
|
GSE158849 | |
GSE158849 (embryo replicate3) | embryo | baseline | one-cell stage, 0.3hpf, untreatment | GSM4812177
|
GSE158849 |
Dataset ID | Tissue / organ | Experiment type | Sample description | Source dataset ID | Project ID | |
---|---|---|---|---|---|---|
GSE59873 (shield, A to V) | embryo | baseline | shield stage, intact embryo, sectioned from animal to vegetal pole | GSM1448795
|
GSE59873 | |
GSE59873 (shield, V to A) | embryo | baseline | shield stage, intact embryo, sectioned from vegetal to animal pole | GSM1448796
|
GSE59873 | |
GSE59873 (shield, V to A, replicate) | embryo | baseline | shield stage, intact embryo, sectioned from vegetal to animal pole, replicate | GSM1448797
|
GSE59873 | |
GSE59873 (shield, L to R) | embryo | baseline | shield stage, intact embryo, sectioned from left to right | GSM1448798
|
GSE59873 | |
GSE59873 (shield, R to L) | embryo | baseline | shield stage, intact embryo, sectioned from right to left | GSM1448799
|
GSE59873 | |
GSE59873 (shield, V to D) | embryo | baseline | shield stage, intact embryo, sectioned from ventral to dorsal end | GSM1448800
|
GSE59873 | |
GSE59873 (shield, D to V) | embryo | baseline | shield stage, intact embryo, sectioned from dorsal to ventral end | GSM1448801
|
GSE59873 | |
GSE59873 (shield, D to V, replicate) | embryo | baseline | shield stage, intact embryo, sectioned from dorsal to ventral end, replicate | GSM1448802
|
GSE59873 |
Dataset ID | Tissue / organ | Experiment type | Sample description | Source dataset ID | Project ID | |
---|---|---|---|---|---|---|
GSE59873 (10 somite, A to P) | embryo | baseline | 10 somite stage, intact embryo, sectioned from anterior to posterior end | GSM1448803
|
GSE59873 | |
GSE59873 (10 somite, A to P, replicate) | embryo | baseline | 10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate | GSM1448804
|
GSE59873 | |
GSE59873 (10 somite, P to A) | embryo | baseline | 10 somite stage, intact embryo, sectioned from posterior to anterior end | GSM1448805
|
GSE59873 | |
GSE59873 (10 somite, V to D) | embryo | baseline | 10 somite stage, intact embryo, sectioned from ventral to dorsal end | GSM1448806
|
GSE59873 | |
GSE59873 (10 somite, D to V) | embryo | baseline | 10 somite stage, intact embryo, sectioned from dorsal to ventral end | GSM1448807
|
GSE59873 | |
GSE59873 (10 somite, L to R) | embryo | baseline | 10 somite stage, intact embryo, sectioned from left to right | GSM1448808
|
GSE59873 | |
GSE59873 (10 somite, R to L) | embryo | baseline | 10 somite stage, intact embryo, sectioned from right to left | GSM1448809
|
GSE59873 |
Dataset ID | Tissue / organ | Experiment type | Sample description | Source dataset ID | Project ID | |
---|---|---|---|---|---|---|
GSE59873 (15 somite, A to P) | embryo | baseline | 15 somite stage, intact embryo, sectioned from anterior to posterior end | GSM1448810
|
GSE59873 | |
GSE59873 (15 somite, P to A) | embryo | baseline | 15 somite stage, intact embryo, sectioned from posterior to anterior end | GSM1448811
|
GSE59873 | |
GSE59873 (15 somite, V to D) | embryo | baseline | 15 somite stage, intact embryo, sectioned from ventral to dorsal end | GSM1448812
|
GSE59873 | |
GSE59873 (15 somite, D to V) | embryo | baseline | 15 somite stage, intact embryo, sectioned from dorsal to ventral end | GSM1448813
|
GSE59873 | |
GSE59873 (15 somite, L to R) | embryo | baseline | 15 somite stage, intact embryo, sectioned from left to right | GSM1448814
|
GSE59873 | |
GSE59873 (15 somite, R to L) | embryo | baseline | 15 somite stage, intact embryo, sectioned from right to left | GSM1448815
|
GSE59873 | |
GSE59873 (15 somite, H to T) | embryo | baseline | 15 somite stage, deyolked embryo, straightened, sectioned head to tail | GSM1448816
|
GSE59873 | |
GSE59873 (15 somite, T to H) | embryo | baseline | 15 somite stage, deyolked embryo, straightened, sectioned tail to head | GSM1448817
|
GSE59873 | |
GSE59873 (15 somite, T to H, replicate) | embryo | baseline | 15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate | GSM1448819
|
GSE59873 |
Dataset ID | Tissue / organ | Experiment type | Sample description | Source dataset ID | Project ID | |
---|---|---|---|---|---|---|
GSE59873 (18 somite, T to H) | embryo | baseline | 18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head | GSM1448820
|
GSE59873 |
Dataset ID | Tissue / organ | Experiment type | Sample description | Source dataset ID | Project ID | |
---|---|---|---|---|---|---|
GSE128350 (1.67dpf whole embryo replicate1) | embryo | baseline | late embryo, 1.67dpf, whole embryo, untreatment | GSM3672145
|
GSE128350 | |
GSE128350 (1.17dpf whole embryo replicate1) | embryo | baseline | late embryo, 1.17dpf, whole embryo, untreatment | GSM3672146
|
GSE128350 | |
GSE128350 (1.17dpf whole embryo replicate2) | embryo | baseline | late embryo, 1.17dpf, whole embryo, untreatment | GSM3672147
|
GSE128350 | |
GSE128350 (1.67dpf whole embryo replicate2) | embryo | baseline | late embryo, 1.67dpf, whole embryo, untreatment | GSM3672157
|
GSE128350 | |
GSE128350 (1.17dpf whole embryo replicate3) | embryo | baseline | late embryo, 1.17dpf, whole embryo, untreatment | GSM3672158
|
GSE128350 |