Fish Spatial Expression Database

GENE ID: ENSDARG00000036227

Symbol	Location	Gene type	Genome version	Species
npvf	19: 19976990 ~ 19980132 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000036227 (npvf), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000077985	kiss2	4: 16827390 ~ 16828499 (+)
ENSDARG00000010841	fshb	7: 32605705 ~ 32612560 (+)
ENSDARG00000003553	gnrhr2	7: 52364748 ~ 52369218 (+)
ENSDARG00000035471	si:dkey-220k22.1	5: 31480342 ~ 31591000 (+)
ENSDARG00000062631	npffr1l2	5: 14165567 ~ 14239078 (-)
ENSDARG00000035609	mtnr1c	5: 22633188 ~ 22665855 (+)
ENSDARG00000067563	kiss1rb	5: 69541667 ~ 69548986 (-)
ENSDARG00000044339	rp2	6: 37513911 ~ 37525879 (-)
ENSDARG00000044326	BX950188.1	6: 36465347 ~ 36542102 (+)
ENSDARG00000002728	kiss1ra	2: 33796207 ~ 33821163 (+)
ENSDARG00000063518	zgc:153913	2: 63298 ~ 66646 (-)
ENSDARG00000090408	NA	1: 7189856 ~ 7448795 (+)
ENSDARG00000086186	opn8a	20: 44250691 ~ 44287488 (+)
ENSDARG00000078536	si:ch211-158d24.2	8: 41533268 ~ 41610205 (+)
ENSDARG00000044900	prlhr2a	8: 37905666 ~ 37950194 (+)
ENSDARG00000056214	gnrh3	17: 20204122 ~ 20207376 (+)
ENSDARG00000022918	tbcc	12: 34891529 ~ 34892823 (+)
ENSDARG00000036227	npvf	19: 19976990 ~ 19980132 (+)
ENSDARG00000036222	npy	19: 20110699 ~ 20114149 (-)
ENSDARG00000077497	igsf10	15: 1086656 ~ 1107108 (+)
ENSDARG00000053833	mtnr1ba	15: 41027466 ~ 41064007 (+)
ENSDARG00000044754	gnrh2	21: 15824182 ~ 15828029 (+)
ENSDARG00000092652	qrfpr4	21: 16144014 ~ 16169912 (+)
ENSDARG00000045016	npffl	11: 276057 ~ 279328 (-)
ENSDARG00000075829	kiss1	11: 23311452 ~ 23322182 (-)
ENSDARG00000036458	prlhr2b	10: 41252525 ~ 41260567 (+)
ENSDARG00000010712	npffr1l3	10: 518546 ~ 532628 (+)
ENSDARG00000054203	npffr1l1	10: 40951697 ~ 40968095 (-)
ENSDARG00000071735	prlh2	24: 11105786 ~ 11110087 (+)
ENSDARG00000091788	NA	--
ENSDARG00000095761	NA	--
ENSDARG00000017470	NA	--
ENSDARG00000035709	NA	--
ENSDARG00000041866	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

shield stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
	GSE59873 (shield, D to V)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end	GSM1448801	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (3 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 3 days-post-cryoinjury	GSM1924887	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000036227

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.