Fish Spatial Expression Database

GENE ID: ENSDARG00000035798

Symbol	Location	Gene type	Genome version	Species
gngt1	19: 40856534 ~ 40859468 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000035798 (gngt1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000045677	opn1sw1	4: 13577665 ~ 13580348 (-)
ENSDARG00000021647	gnai1	4: 22680442 ~ 22714063 (+)
ENSDARG00000035357	gnb2	5: 38263240 ~ 38297391 (+)
ENSDARG00000037941	syt5a	3: 32142382 ~ 32151167 (+)
ENSDARG00000004459	unc119.2	3: 32594357 ~ 32619634 (+)
ENSDARG00000010680	gngt2a	3: 23092762 ~ 23096141 (+)
ENSDARG00000056791	pde6ga	3: 19460991 ~ 19466015 (+)
ENSDARG00000044199	gnat1	6: 42918933 ~ 42930302 (+)
ENSDARG00000043094	gnas	6: 49811831 ~ 49873020 (-)
ENSDARG00000038694	zgc:101744	2: 37089362 ~ 37103622 (-)
ENSDARG00000019278	NA	2: 5300405 ~ 5311253 (+)
ENSDARG00000004358	gnb3a	16: 12022543 ~ 12049762 (+)
ENSDARG00000030644	gnai3	8: 25145464 ~ 25220957 (+)
ENSDARG00000042529	gnat2	8: 25225590 ~ 25247284 (-)
ENSDARG00000002193	rho	8: 54076195 ~ 54077740 (-)
ENSDARG00000090454	gnb1a	8: 53269657 ~ 53334650 (+)
ENSDARG00000014854	reep1	17: 43486436 ~ 43504103 (+)
ENSDARG00000000380	pde6a	14: 25005403 ~ 25035010 (-)
ENSDARG00000031382	reep2	14: 21596716 ~ 21618005 (-)
ENSDARG00000096519	irbpl	12: 2660733 ~ 2663471 (+)
ENSDARG00000004160	reep3b	12: 8822717 ~ 8882186 (+)
ENSDARG00000002696	gnb3b	19: 5106226 ~ 5135345 (-)
ENSDARG00000035798	gngt1	19: 40856534 ~ 40859468 (+)
ENSDARG00000009637	rcvrn3	19: 10339538 ~ 10352579 (+)
ENSDARG00000008107	src	23: 39346774 ~ 39450700 (+)
ENSDARG00000044684	rbp4l	21: 20338613 ~ 20342096 (-)
ENSDARG00000056511	arr3a	10: 26800213 ~ 26811397 (+)
ENSDARG00000045415	gnal	24: 8904135 ~ 8973300 (+)
ENSDARG00000005944	NA	--
ENSDARG00000034480	NA	--
ENSDARG00000037665	NA	--
ENSDARG00000060360	NA	--
ENSDARG00000078461	NA	--
ENSDARG00000022820	NA	--
ENSDARG00000092921	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, V to A)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole	GSM1448796	GSE59873
GSE59873 (shield, R to L)	embryo	baseline	shield stage, intact embryo, sectioned from right to left	GSM1448799	GSE59873
GSE59873 (shield, V to D)	embryo	baseline	shield stage, intact embryo, sectioned from ventral to dorsal end	GSM1448800	GSE59873

10 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000035798

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.