Fish Spatial Expression Database

GENE ID: ENSDARG00000092238

Symbol	Location	Gene type	Genome version	Species
or111-9	15: 31407840 ~ 31409013 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000092238 (or111-9), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000013533	hoxb4a	3: 23710839 ~ 23723982 (+)
ENSDARG00000010246	prmt1	3: 32356833 ~ 32363021 (-)
ENSDARG00000040497	BX004816.1	3: 2971852 ~ 2979129 (+)
ENSDARG00000022512	zgc:109913	6: 55282629 ~ 55286872 (+)
ENSDARG00000058995	jmjd4	2: 3403264 ~ 3414068 (+)
ENSDARG00000042114	bin1a	9: 7410798 ~ 7444753 (-)
ENSDARG00000091864	zgc:158701	16: 11760602 ~ 11766265 (-)
ENSDARG00000094519	si:ch211-152p23.2	8: 41413919 ~ 41440689 (+)
ENSDARG00000036171	rnasel3	14: 38654300 ~ 38656463 (+)
ENSDARG00000017853	prepl	13: 10621257 ~ 10647310 (+)
ENSDARG00000094125	or103-2	15: 31435957 ~ 31438111 (+)
ENSDARG00000004598	or102-2	15: 31466978 ~ 31470101 (+)
ENSDARG00000058724	or126-7	15: 5162274 ~ 5165013 (-)
ENSDARG00000086383	or111-8	15: 31404806 ~ 31406093 (-)
ENSDARG00000092238	or111-9	15: 31407840 ~ 31409013 (-)
ENSDARG00000035048	or115-10	21: 40235905 ~ 40237971 (+)
ENSDARG00000092406	or115-8	21: 40254429 ~ 40256146 (+)
ENSDARG00000068937	si:ch211-218m3.11	21: 40261187 ~ 40263307 (+)
ENSDARG00000053779	si:ch211-218m3.13	21: 40276569 ~ 40279077 (+)
ENSDARG00000044337	or115-6	21: 40280027 ~ 40282140 (+)
ENSDARG00000022319	or115-5	21: 40287100 ~ 40289652 (+)
ENSDARG00000044336	si:ch211-218m3.16	21: 40292801 ~ 40296052 (+)
ENSDARG00000053817	or115-2	21: 40296480 ~ 40297710 (+)
ENSDARG00000068660	or105-1	10: 36345176 ~ 36346363 (+)
ENSDARG00000076983	rnasel4	22: 6254194 ~ 6258740 (+)
ENSDARG00000043196	rnasel2	22: 6293563 ~ 6294749 (+)
ENSDARG00000092852	NA	--
ENSDARG00000069040	NA	--
ENSDARG00000070345	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate1)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812175	GSE158849
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

10 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
	GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

late embryo

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
	GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000092238

Function

There is no KEGG result!

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

GENE ID: ENSDARG00000092238

Function

There is no KEGG result!

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.