Fish Spatial Expression Database

GENE ID: ENSDARG00000056804

Symbol	Location	Gene type	Genome version	Species
si:dkey-40g16.6	15: 21694388 ~ 21702317 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000056804 (si:dkey-40g16.6), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000038384	th2	4: 17380578 ~ 17391091 (-)
ENSDARG00000020143	pah	4: 17391680 ~ 17409533 (-)
ENSDARG00000018351	hpda	5: 2815021 ~ 2852285 (+)
ENSDARG00000037121	mat2ab	5: 69199198 ~ 69212184 (-)
ENSDARG00000005154	aspa	5: 62340799 ~ 62356975 (+)
ENSDARG00000055172	si:ch211-256m1.8	3: 25154078 ~ 25165189 (+)
ENSDARG00000017590	nit2	6: 37431169 ~ 37441520 (-)
ENSDARG00000034430	zgc:172121	6: 29288006 ~ 29292887 (+)
ENSDARG00000016494	ddc	16: 8298542 ~ 8342749 (-)
ENSDARG00000014676	bckdhb	16: 5013868 ~ 5105322 (-)
ENSDARG00000033594	ido1	8: 50463227 ~ 50482781 (-)
ENSDARG00000044935	hpdb	8: 34731982 ~ 34742234 (+)
ENSDARG00000020448	adi1	17: 51224421 ~ 51229737 (+)
ENSDARG00000071429	tdo2a	14: 36738063 ~ 36750593 (+)
ENSDARG00000002219	si:dkey-103j14.5	13: 23233956 ~ 23270576 (-)
ENSDARG00000021681	asrgl1	13: 27768898 ~ 27782764 (+)
ENSDARG00000039605	mat1a	13: 18628920 ~ 18637244 (-)
ENSDARG00000002071	adss2	13: 11489953 ~ 11536951 (-)
ENSDARG00000040555	bckdha	18: 36066389 ~ 36081908 (+)
ENSDARG00000057239	tph2	18: 16989764 ~ 17001056 (-)
ENSDARG00000016375	asns	19: 25656812 ~ 25678002 (-)
ENSDARG00000056804	si:dkey-40g16.6	15: 21694388 ~ 21702317 (-)
ENSDARG00000039077	tyr	15: 43799258 ~ 43818697 (+)
ENSDARG00000012932	mat2b	21: 32061725 ~ 32082149 (-)
ENSDARG00000023176	tdo2b	11: 34084532 ~ 34097437 (-)
ENSDARG00000092976	si:ch211-127i16.2	10: 19427474 ~ 19523752 (-)
ENSDARG00000040334	mat2aa	10: 7810455 ~ 7821686 (-)
ENSDARG00000063665	mat2al	10: 4969634 ~ 4980150 (-)
ENSDARG00000061355	aoc1	24: 40001290 ~ 40009446 (-)
ENSDARG00000029432	tph1a	25: 8139220 ~ 8160030 (-)
ENSDARG00000060260	NA	--
ENSDARG00000074891	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
	GSE59873 (shield, V to D)	embryo	baseline	shield stage, intact embryo, sectioned from ventral to dorsal end	GSM1448800	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (3 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 3 days-post-cryoinjury	GSM1924887	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000056804

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.