Fish Spatial Expression Database

GENE ID: ENSDARG00000096415

Symbol	Location	Gene type	Genome version	Species
raf1a	23: 4709607 ~ 4747277 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000096415 (raf1a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000054937	badb	7: 25129520 ~ 25133853 (-)
ENSDARG00000017014	ywhae2	7: 72012397 ~ 72029683 (+)
ENSDARG00000078888	iqgap1	7: 50641919 ~ 50764714 (-)
ENSDARG00000067626	ywhag1	5: 3501859 ~ 3545221 (+)
ENSDARG00000094526	ksr2	5: 12272632 ~ 12525441 (-)
ENSDARG00000094172	si:ch73-263f13.1	5: 12503494 ~ 12524996 (-)
ENSDARG00000015905	lztr1	5: 12724046 ~ 12743212 (-)
ENSDARG00000042069	pebp1	5: 15350954 ~ 15357819 (+)
ENSDARG00000057414	phb	3: 15736811 ~ 15746999 (+)
ENSDARG00000013078	ywhaba	6: 52212574 ~ 52225289 (+)
ENSDARG00000068918	map2k2b	2: 57416844 ~ 57443210 (-)
ENSDARG00000030154	pak7	20: 54685143 ~ 54744600 (+)
ENSDARG00000038225	nras	8: 11114754 ~ 11131695 (-)
ENSDARG00000021521	rgs14a	14: 872016 ~ 899192 (-)
ENSDARG00000033501	zgc:64189	14: 28013626 ~ 28052551 (-)
ENSDARG00000007825	map2k1	18: 19419120 ~ 19451165 (+)
ENSDARG00000069150	rit1	19: 24039830 ~ 24065522 (+)
ENSDARG00000006399	ywhae1	15: 24746444 ~ 24754895 (+)
ENSDARG00000030933	ksr1b	15: 31070603 ~ 31147322 (-)
ENSDARG00000096415	raf1a	23: 4709607 ~ 4747277 (+)
ENSDARG00000073707	cnksr2b	21: 25421368 ~ 25522906 (-)
ENSDARG00000087346	rap1ab	11: 15833565 ~ 15875054 (-)
ENSDARG00000020544	rem1	11: 24313931 ~ 24332052 (+)
ENSDARG00000068714	ksr1a	10: 37173029 ~ 37256989 (+)
ENSDARG00000006609	map2k2a	22: 20388621 ~ 20403194 (-)
ENSDARG00000040853	shoc2	22: 29596646 ~ 29640181 (-)
ENSDARG00000010844	kras	25: 31099908 ~ 31118923 (-)
ENSDARG00000068613	NA	--
ENSDARG00000079444	NA	--
ENSDARG00000070524	NA	--
ENSDARG00000091020	NA	--

Expression

Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
GSE159709 (Visium-sample A)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838131	GSE159709
GSE159709 (Visium-sample B)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838132	GSE159709
GSE159709 (Visium-sample C)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838133	GSE159709

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE158849 (embryo replicate1)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812175	GSE158849
GSE158849 (embryo replicate2)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812176	GSE158849
GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000096415

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.