Fish Spatial Expression Database

GENE ID: ENSDARG00000037527

Symbol	Location	Gene type	Genome version	Species
si:rp71-17i16.5	23: 20357247 ~ 20363261 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000037527 (si:rp71-17i16.5), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000017757	pik3cg	4: 3343171 ~ 3353595 (-)
ENSDARG00000059855	wdr66	5: 41774366 ~ 41792672 (+)
ENSDARG00000067713	snx18a	5: 40272848 ~ 40292299 (-)
ENSDARG00000038011	cyth4a	3: 29487300 ~ 29508959 (-)
ENSDARG00000005159	cyth1a	3: 56408840 ~ 56541751 (-)
ENSDARG00000076742	cyth1a	3: 57462228 ~ 57530323 (-)
ENSDARG00000068397	tns2b	6: 39011703 ~ 39051319 (-)
ENSDARG00000074283	inpp5d	6: 28140816 ~ 28192192 (+)
ENSDARG00000019278	NA	2: 5300405 ~ 5311253 (+)
ENSDARG00000096661	si:ch211-286b5.5	1: 55264025 ~ 55270966 (-)
ENSDARG00000024740	gng13a	1: 9227081 ~ 9228007 (-)
ENSDARG00000060753	pear1	16: 30438041 ~ 30520157 (+)
ENSDARG00000004358	gnb3a	16: 12022543 ~ 12049762 (+)
ENSDARG00000095654	tns3.1	20: 6543674 ~ 6576809 (+)
ENSDARG00000031911	tns3.2	20: 6590220 ~ 6666641 (+)
ENSDARG00000060609	cd109	20: 49119633 ~ 49175503 (+)
ENSDARG00000029894	slc2a15a	13: 28417297 ~ 28442086 (+)
ENSDARG00000055377	gnb5b	18: 39067575 ~ 39105519 (+)
ENSDARG00000021488	cyth1b	12: 34051434 ~ 34192955 (+)
ENSDARG00000007807	cyth3a	12: 17504559 ~ 17562703 (+)
ENSDARG00000002696	gnb3b	19: 5106226 ~ 5135345 (-)
ENSDARG00000069603	taok1a	15: 25588357 ~ 25629046 (-)
ENSDARG00000037527	si:rp71-17i16.5	23: 20357247 ~ 20363261 (-)
ENSDARG00000077875	slc2a5	23: 22616063 ~ 22633136 (+)
ENSDARG00000076292	tns2a	23: 10469955 ~ 10587257 (+)
ENSDARG00000044246	snx18b	10: 9092815 ~ 9097996 (+)
ENSDARG00000005560	ywhah	10: 17166035 ~ 17170086 (-)
ENSDARG00000034480	NA	--
ENSDARG00000039932	NA	--
ENSDARG00000079451	NA	--
ENSDARG00000079812	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate2)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812176	GSE158849
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (7 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 7 days-post-cryoinjury	GSM1924888	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000037527

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.