Fish Spatial Expression Database

GENE ID: ENSDARG00000013963

Symbol	Location	Gene type	Genome version	Species
mipb	23: 6637611 ~ 6641223 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000013963 (mipb), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000053480	aqp9b	7: 30371893 ~ 30390376 (+)
ENSDARG00000003808	aqp3a	5: 43006422 ~ 43011814 (+)
ENSDARG00000004082	cx39.9	5: 23630384 ~ 23635908 (+)
ENSDARG00000011998	bfsp2	2: 32761130 ~ 32769759 (-)
ENSDARG00000023713	aqp1a.1	2: 2737422 ~ 2749333 (+)
ENSDARG00000016809	prkacab	1: 55843552 ~ 55873178 (-)
ENSDARG00000073750	crygm2d18	9: 22120874 ~ 22122637 (-)
ENSDARG00000069451	gja8a	9: 30430188 ~ 30432778 (-)
ENSDARG00000041171	crygs2	9: 27733334 ~ 27738110 (-)
ENSDARG00000018797	crygmxl1	9: 22056172 ~ 22057658 (-)
ENSDARG00000041925	cryba2b	9: 11554089 ~ 11560432 (-)
ENSDARG00000041295	lim2.5	16: 50166421 ~ 50181206 (-)
ENSDARG00000079687	rnf10	8: 41256612 ~ 41273768 (-)
ENSDARG00000023309	spryd4	8: 21159122 ~ 21162762 (+)
ENSDARG00000017773	slc16a12a	17: 23578316 ~ 23596969 (+)
ENSDARG00000074919	NA	13: 985442 ~ 992458 (-)
ENSDARG00000045141	aqp8a.1	12: 20366109 ~ 20373058 (-)
ENSDARG00000053862	crygmx	12: 30838167 ~ 30841679 (-)
ENSDARG00000015445	lim2.4	19: 10537443 ~ 10554352 (-)
ENSDARG00000058678	aqp10b	19: 7810028 ~ 7816886 (+)
ENSDARG00000037402	lim2.3	15: 19646902 ~ 19660757 (+)
ENSDARG00000045944	slc6a1a	23: 4834447 ~ 4855122 (-)
ENSDARG00000013963	mipb	23: 6637611 ~ 6641223 (-)
ENSDARG00000026787	aqp7	21: 12010505 ~ 12021593 (+)
ENSDARG00000053875	cryba1b	21: 39185461 ~ 39195314 (+)
ENSDARG00000068507	crybb1	10: 44021147 ~ 44027391 (-)
ENSDARG00000069608	palm2akap2	10: 4874542 ~ 4911001 (+)
ENSDARG00000043279	aqp12	22: 2874838 ~ 2886937 (-)
ENSDARG00000059015	lim2.2	22: 3223489 ~ 3232634 (+)
ENSDARG00000042992	crygs1	22: 11710467 ~ 11714158 (-)
ENSDARG00000002988	tnnt2d	25: 20215964 ~ 20226584 (+)
ENSDARG00000014134	NA	--
ENSDARG00000042617	NA	--
ENSDARG00000075596	NA	--
ENSDARG00000087437	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate2)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812176	GSE158849
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, V to A)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole	GSM1448796	GSE59873
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
GSE59873 (shield, D to V)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end	GSM1448801	GSE59873
GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000013963

Function

There is no KEGG result!

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

GENE ID: ENSDARG00000013963

Function

There is no KEGG result!

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.