Fish Spatial Expression Database

GENE ID: ENSDARG00000012125

Symbol	Location	Gene type	Genome version	Species
cnga1b	23: 43849190 ~ 43866354 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000012125 (cnga1b), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000063158	NA	7: 73332486 ~ 73402030 (+)
ENSDARG00000075800	calml4a	7: 34492744 ~ 34496196 (+)
ENSDARG00000018329	gc2	7: 51267478 ~ 51300277 (-)
ENSDARG00000013252	tmc5	3: 26734162 ~ 26751819 (+)
ENSDARG00000044767	tspan10	3: 15176737 ~ 15186292 (+)
ENSDARG00000078210	tulp1b	6: 54538948 ~ 54562508 (+)
ENSDARG00000044194	tcta	6: 43015916 ~ 43019222 (+)
ENSDARG00000052433	inha	6: 21068783 ~ 21091948 (-)
ENSDARG00000029898	cnga1a	1: 43894238 ~ 43899422 (-)
ENSDARG00000089742	fam161a	1: 53686995 ~ 53700392 (-)
ENSDARG00000060264	si:dkey-37g12.1	1: 41886830 ~ 41924484 (+)
ENSDARG00000011066	glra3	1: 38416106 ~ 38538284 (-)
ENSDARG00000068280	NA	9: 50316921 ~ 50340720 (+)
ENSDARG00000074638	loxhd1b	8: 714875 ~ 810556 (-)
ENSDARG00000002193	rho	8: 54076195 ~ 54077740 (-)
ENSDARG00000000380	pde6a	14: 25005403 ~ 25035010 (-)
ENSDARG00000012019	glra1	14: 25816874 ~ 25911567 (+)
ENSDARG00000031427	calm2a	13: 8777633 ~ 8785610 (-)
ENSDARG00000019179	lrit1a	13: 29462249 ~ 29467558 (+)
ENSDARG00000068242	cngb1a	18: 45483282 ~ 45519748 (+)
ENSDARG00000038018	prph2a	12: 34896956 ~ 34901874 (+)
ENSDARG00000025504	gucy2f	15: 29362714 ~ 29381134 (+)
ENSDARG00000007655	crybb1l3	15: 28096152 ~ 28104403 (+)
ENSDARG00000070127	nfxl1	23: 43870886 ~ 43929041 (+)
ENSDARG00000012125	cnga1b	23: 43849190 ~ 43866354 (+)
ENSDARG00000011671	pde6b	21: 20356458 ~ 20376607 (+)
ENSDARG00000086362	pou6f2	24: 10039165 ~ 10272212 (+)
ENSDARG00000042107	cngb1b	25: 17508235 ~ 17552299 (-)
ENSDARG00000059347	calml4b	25: 1266945 ~ 1323928 (-)
ENSDARG00000078331	best1	25: 3069671 ~ 3087556 (-)
ENSDARG00000070439	NA	--
ENSDARG00000022820	NA	--
ENSDARG00000044447	NA	--
ENSDARG00000061945	NA	--
ENSDARG00000087082	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873
GSE59873 (shield, V to A, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole, replicate	GSM1448797	GSE59873
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
GSE59873 (shield, R to L)	embryo	baseline	shield stage, intact embryo, sectioned from right to left	GSM1448799	GSE59873
GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

late embryo

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
	GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000012125

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.