Fish Spatial Expression Database

GENE ID: ENSDARG00000027236

Symbol	Location	Gene type	Genome version	Species
rs1a	11: 30244356 ~ 30252098 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000027236 (rs1a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000036043	znf408	7: 38744924 ~ 38750197 (+)
ENSDARG00000034424	atp1b2b	5: 38475531 ~ 38506981 (-)
ENSDARG00000044341	chst7	6: 37603968 ~ 37622576 (-)
ENSDARG00000010472	atp1a2a	2: 44203075 ~ 44255537 (-)
ENSDARG00000067950	zcchc2	2: 50062165 ~ 50099982 (+)
ENSDARG00000021739	klhl24a	2: 44571200 ~ 44604455 (+)
ENSDARG00000075116	sall2	2: 38147761 ~ 38157339 (+)
ENSDARG00000015790	atp1b3a	2: 16547706 ~ 16565690 (-)
ENSDARG00000062661	abca4b	2: 15203322 ~ 15294707 (+)
ENSDARG00000040432	klf2b	2: 55665095 ~ 55673225 (+)
ENSDARG00000002791	atp1a1a.1	1: 1712140 ~ 1793371 (+)
ENSDARG00000007739	atp1a1a.2	1: 1789357 ~ 1796832 (+)
ENSDARG00000039131	atp1a1a.3	1: 1805294 ~ 1815660 (+)
ENSDARG00000040252	atp1a1a.5	1: 1838164 ~ 1850104 (+)
ENSDARG00000001870	atp1a1a.4	1: 1689775 ~ 1706159 (+)
ENSDARG00000019856	atp1a1b	9: 35901554 ~ 35922201 (+)
ENSDARG00000075012	glra2	9: 54891962 ~ 54940881 (+)
ENSDARG00000018259	atp1a3a	19: 6328234 ~ 6385594 (-)
ENSDARG00000010610	sarm1	15: 28188362 ~ 28200049 (-)
ENSDARG00000042837	atp1b3b	15: 4353161 ~ 4415917 (-)
ENSDARG00000075067	aipl1	15: 24873388 ~ 24884784 (-)
ENSDARG00000089063	lactbl1a	23: 21964325 ~ 21974831 (+)
ENSDARG00000077852	samd11	23: 23020709 ~ 23123901 (+)
ENSDARG00000087844	plekhn1	23: 23232136 ~ 23252668 (+)
ENSDARG00000070467	lactbl1b	11: 28127199 ~ 28157129 (-)
ENSDARG00000058448	zrsr2	11: 12732247 ~ 12744082 (-)
ENSDARG00000058504	ap1s2	11: 12719944 ~ 12728353 (+)
ENSDARG00000027236	rs1a	11: 30244356 ~ 30252098 (+)
ENSDARG00000020191	ppef1	11: 30253968 ~ 30280958 (+)
ENSDARG00000008275	klhl24b	24: 25760986 ~ 25788841 (-)
ENSDARG00000045904	nr2e3	25: 22274642 ~ 22278655 (+)
ENSDARG00000013605	NA	--
ENSDARG00000036815	NA	--
ENSDARG00000077693	NA	--
ENSDARG00000014095	NA	--
ENSDARG00000069831	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate1)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812175	GSE158849
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (shield, V to A)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole	GSM1448796	GSE59873
	GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000027236

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.