Fish Spatial Expression Database

GENE ID: ENSDARG00000006341

Symbol	Location	Gene type	Genome version	Species
tas1r3	11: 40731602 ~ 40742507 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000006341 (tas1r3), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000077654	grm8a	4: 3478049 ~ 3745093 (+)
ENSDARG00000059792	trpm5	7: 48667081 ~ 48702051 (+)
ENSDARG00000013649	casr	5: 67768162 ~ 67783593 (-)
ENSDARG00000019932	slc5a11	3: 18655673 ~ 18675688 (-)
ENSDARG00000079945	pjvk	6: 11422044 ~ 11431630 (-)
ENSDARG00000005314	NA	1: 49501171 ~ 49505449 (-)
ENSDARG00000022938	taar11	20: 46131812 ~ 46132911 (+)
ENSDARG00000014927	uts1	20: 38724575 ~ 38727396 (+)
ENSDARG00000053135	tas1r2.2	8: 46587593 ~ 46597751 (+)
ENSDARG00000079880	tas2r200.1	8: 30784020 ~ 30784982 (+)
ENSDARG00000074066	tas2r200.2	8: 30780985 ~ 30782089 (+)
ENSDARG00000077021	calhm1	13: 25412307 ~ 25417915 (+)
ENSDARG00000022503	pkd2l1	13: 25455319 ~ 25471376 (+)
ENSDARG00000077911	treh	18: 43846936 ~ 43866526 (-)
ENSDARG00000063347	hrc	12: 4396308 ~ 4435303 (-)
ENSDARG00000074666	zgc:153760	12: 4308522 ~ 4317165 (-)
ENSDARG00000087756	si:ch211-173d10.4	12: 4360817 ~ 4370585 (-)
ENSDARG00000061042	gabbr2	19: 34311374 ~ 34679738 (+)
ENSDARG00000016667	gabbr1b	19: 27040533 ~ 27261102 (-)
ENSDARG00000056739	tas1r1	23: 21424747 ~ 21440054 (+)
ENSDARG00000056084	igsf21b	23: 21638258 ~ 21661916 (+)
ENSDARG00000017986	vps13d	23: 21696560 ~ 21763598 (-)
ENSDARG00000052537	cptp	23: 37086159 ~ 37093123 (+)
ENSDARG00000039263	zbtb48	23: 24941299 ~ 24955155 (-)
ENSDARG00000077875	slc2a5	23: 22616063 ~ 22633136 (+)
ENSDARG00000079294	or115-15	21: 40195452 ~ 40197014 (+)
ENSDARG00000056277	or132-5	21: 25375172 ~ 25376738 (+)
ENSDARG00000025671	grm6b	11: 25634041 ~ 25679721 (+)
ENSDARG00000006341	tas1r3	11: 40731602 ~ 40742507 (-)
ENSDARG00000038207	aldh4a1	11: 41936435 ~ 41960276 (+)
ENSDARG00000016649	akr7a3	11: 41838036 ~ 41850086 (+)
ENSDARG00000013871	slc5a1	10: 17135631 ~ 17159761 (-)
ENSDARG00000068659	or104-2	10: 36349225 ~ 36350693 (+)
ENSDARG00000086098	NA	--
ENSDARG00000092891	NA	--
ENSDARG00000077310	NA	--
ENSDARG00000015601	NA	--
ENSDARG00000076078	NA	--
ENSDARG00000094718	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873
GSE59873 (shield, V to A, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole, replicate	GSM1448797	GSE59873
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (3 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 3 days-post-cryoinjury	GSM1924887	GSE74652
	GSE74652 (7 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 7 days-post-cryoinjury	GSM1924888	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000006341

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.