Fish Spatial Expression Database

GENE ID: ENSDARG00000044034

Symbol	Location	Gene type	Genome version	Species
tmem86a	25: 24250247 ~ 24262450 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000044034 (tmem86a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000030161	ppp1r14bb	7: 60359347 ~ 60396578 (+)
ENSDARG00000011851	map2k5	7: 33970698 ~ 34062301 (-)
ENSDARG00000060127	adamts3	5: 45322734 ~ 45532848 (+)
ENSDARG00000069940	ppap2d	3: 47322494 ~ 47387377 (+)
ENSDARG00000003754	tspan2a	6: 49107048 ~ 49159207 (-)
ENSDARG00000028878	vipr1a	2: 21229909 ~ 21300115 (+)
ENSDARG00000018190	get3	1: 52137528 ~ 52152993 (+)
ENSDARG00000078415	lrrc3	9: 42157578 ~ 42164744 (+)
ENSDARG00000063224	nxph2a	9: 10014514 ~ 10043859 (+)
ENSDARG00000013371	isoc2	16: 12793911 ~ 12809886 (-)
ENSDARG00000068575	tmem51a	8: 26701038 ~ 26709959 (-)
ENSDARG00000032802	ktn1	17: 43926523 ~ 44002032 (+)
ENSDARG00000014230	dlst	17: 52524355 ~ 52553447 (+)
ENSDARG00000074597	lzts2a	13: 18801094 ~ 18863680 (-)
ENSDARG00000055938	tspan14	13: 21638454 ~ 21650404 (-)
ENSDARG00000079371	lrrc3ca	12: 10599604 ~ 10609781 (+)
ENSDARG00000054033	hoxb1b	12: 27141140 ~ 27142834 (+)
ENSDARG00000062976	iffo1a	19: 9481698 ~ 9503473 (-)
ENSDARG00000035870	laptm4b	19: 32864577 ~ 32888758 (-)
ENSDARG00000007971	cks1b	19: 7835025 ~ 7838232 (+)
ENSDARG00000059202	tspan2b	23: 423351 ~ 452365 (-)
ENSDARG00000009653	lhfpl2a	21: 300647 ~ 308852 (-)
ENSDARG00000061916	tmem51b	11: 25833219 ~ 25853212 (-)
ENSDARG00000079188	nxph2b	11: 33846440 ~ 33857911 (-)
ENSDARG00000059058	vipr1b	24: 20708174 ~ 20808283 (-)
ENSDARG00000044034	tmem86a	25: 24250247 ~ 24262450 (+)
ENSDARG00000014303	vac14	25: 17589906 ~ 17613025 (+)
ENSDARG00000039926	NA	--
ENSDARG00000059134	NA	--
ENSDARG00000071237	NA	--
ENSDARG00000071509	NA	--
ENSDARG00000079103	NA	--
ENSDARG00000090433	NA	--
ENSDARG00000091844	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873
GSE59873 (shield, V to A)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole	GSM1448796	GSE59873
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
GSE59873 (shield, R to L)	embryo	baseline	shield stage, intact embryo, sectioned from right to left	GSM1448799	GSE59873
GSE59873 (shield, D to V)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end	GSM1448801	GSE59873
GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P, replicate)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate	GSM1448804	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
	GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (3 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 3 days-post-cryoinjury	GSM1924887	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000044034

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.