| Symbol | Location | Gene type | Genome version | Species |
|---|---|---|---|---|
| rag1 | 25: 9003230 ~ 9009902 (+) | protein_coding | GRCz11 | Danio rerio |
| Gene ID | Symbol | Location |
|---|---|---|
| ENSDARG00000068701 | gpr85 | 4: 6643421 ~ 6647605 (+) |
| ENSDARG00000000767 | spi1b | 7: 32644673 ~ 32659353 (-) |
| ENSDARG00000077162 | nwd2 | 7: 61050329 ~ 61177064 (+) |
| ENSDARG00000035398 | enc1 | 5: 34622320 ~ 34638624 (+) |
| ENSDARG00000038066 | kpna2 | 3: 25369965 ~ 25377163 (-) |
| ENSDARG00000096280 | ighz | 3: 33994684 ~ 33997763 (-) |
| ENSDARG00000058145 | atp7b | 6: 10094061 ~ 10132102 (+) |
| ENSDARG00000094684 | si:dkey-149i17.7 | 2: 24885987 ~ 24886752 (+) |
| ENSDARG00000087646 | runx1 | 1: 1362932 ~ 1402303 (-) |
| ENSDARG00000004712 | tbr1b | 9: 51427826 ~ 51436377 (-) |
| ENSDARG00000034616 | mlf2 | 16: 31827502 ~ 31837482 (+) |
| ENSDARG00000069307 | pomcb | 20: 42968785 ~ 42972599 (-) |
| ENSDARG00000011042 | pgbd5 | 13: 24022963 ~ 24056275 (+) |
| ENSDARG00000013539 | ikzf1 | 13: 15957508 ~ 15994472 (-) |
| ENSDARG00000011879 | foxn1 | 15: 28129683 ~ 28161224 (-) |
| ENSDARG00000053666 | myb | 23: 31815423 ~ 31830043 (+) |
| ENSDARG00000044797 | cd8a | 21: 11560153 ~ 11563406 (+) |
| ENSDARG00000076259 | tbr1a | 11: 10812949 ~ 10828539 (-) |
| ENSDARG00000015567 | zic1 | 24: 4970580 ~ 4973765 (-) |
| ENSDARG00000010075 | NA | 24: 32560395 ~ 32563875 (-) |
| ENSDARG00000052122 | rag1 | 25: 9003230 ~ 9009902 (+) |
| ENSDARG00000052121 | rag2 | 25: 9010425 ~ 9013963 (-) |
| ENSDARG00000063899 | mt-nd2 | MT: 4993 ~ 6039 (+) |
| ENSDARG00000063905 | mt-co1 | MT: 6425 ~ 7975 (+) |
| ENSDARG00000063917 | mt-nd4 | MT: 11299 ~ 12679 (+) |
| ENSDARG00000063924 | mt-cyb | MT: 15308 ~ 16448 (+) |
| ENSDARG00000059282 | NA | -- |
| ENSDARG00000088098 | NA | -- |
| ENSDARG00000025921 | NA | -- |
| Dataset ID | Tissue / organ | Technique | Experiment type | Sample description | Source dataset ID | Project ID | |
|---|---|---|---|---|---|---|---|
| GSE120581 (tail replicate1) | tail | Geo-seq | baseline | late embryo, 2.3dpf, the tails of embryos, untreatment | GSM3402086-GSM3402121
|
GSE120581 | |
| GSE120581 (tail replicate2) | tail | Geo-seq | baseline | late embryo, 2.3dpf, the tails of embryos, untreatment | GSM3402122-GSM3402157
|
GSE120581 |
| Dataset ID | Tissue / organ | Experiment type | Sample description | Source dataset ID | Project ID | |
|---|---|---|---|---|---|---|
| GSE158849 (embryo replicate2) | embryo | baseline | one-cell stage, 0.3hpf, untreatment | GSM4812176
|
GSE158849 | |
| GSE158849 (embryo replicate3) | embryo | baseline | one-cell stage, 0.3hpf, untreatment | GSM4812177
|
GSE158849 |
| Dataset ID | Tissue / organ | Experiment type | Sample description | Source dataset ID | Project ID | |
|---|---|---|---|---|---|---|
| GSE59873 (shield, A to V) | embryo | baseline | shield stage, intact embryo, sectioned from animal to vegetal pole | GSM1448795
|
GSE59873 | |
| GSE59873 (shield, V to A, replicate) | embryo | baseline | shield stage, intact embryo, sectioned from vegetal to animal pole, replicate | GSM1448797
|
GSE59873 | |
| GSE59873 (shield, D to V, replicate) | embryo | baseline | shield stage, intact embryo, sectioned from dorsal to ventral end, replicate | GSM1448802
|
GSE59873 |
| Dataset ID | Tissue / organ | Experiment type | Sample description | Source dataset ID | Project ID | |
|---|---|---|---|---|---|---|
| GSE59873 (10 somite, A to P) | embryo | baseline | 10 somite stage, intact embryo, sectioned from anterior to posterior end | GSM1448803
|
GSE59873 | |
| GSE59873 (10 somite, A to P, replicate) | embryo | baseline | 10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate | GSM1448804
|
GSE59873 | |
| GSE59873 (10 somite, P to A) | embryo | baseline | 10 somite stage, intact embryo, sectioned from posterior to anterior end | GSM1448805
|
GSE59873 | |
| GSE59873 (10 somite, V to D) | embryo | baseline | 10 somite stage, intact embryo, sectioned from ventral to dorsal end | GSM1448806
|
GSE59873 | |
| GSE59873 (10 somite, D to V) | embryo | baseline | 10 somite stage, intact embryo, sectioned from dorsal to ventral end | GSM1448807
|
GSE59873 | |
| GSE59873 (10 somite, L to R) | embryo | baseline | 10 somite stage, intact embryo, sectioned from left to right | GSM1448808
|
GSE59873 | |
| GSE59873 (10 somite, R to L) | embryo | baseline | 10 somite stage, intact embryo, sectioned from right to left | GSM1448809
|
GSE59873 |
| Dataset ID | Tissue / organ | Experiment type | Sample description | Source dataset ID | Project ID | |
|---|---|---|---|---|---|---|
| GSE59873 (15 somite, A to P) | embryo | baseline | 15 somite stage, intact embryo, sectioned from anterior to posterior end | GSM1448810
|
GSE59873 | |
| GSE59873 (15 somite, P to A) | embryo | baseline | 15 somite stage, intact embryo, sectioned from posterior to anterior end | GSM1448811
|
GSE59873 | |
| GSE59873 (15 somite, V to D) | embryo | baseline | 15 somite stage, intact embryo, sectioned from ventral to dorsal end | GSM1448812
|
GSE59873 | |
| GSE59873 (15 somite, R to L) | embryo | baseline | 15 somite stage, intact embryo, sectioned from right to left | GSM1448815
|
GSE59873 | |
| GSE59873 (15 somite, H to T) | embryo | baseline | 15 somite stage, deyolked embryo, straightened, sectioned head to tail | GSM1448816
|
GSE59873 | |
| GSE59873 (15 somite, T to H) | embryo | baseline | 15 somite stage, deyolked embryo, straightened, sectioned tail to head | GSM1448817
|
GSE59873 | |
| GSE59873 (15 somite, T to H, replicate) | embryo | baseline | 15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate | GSM1448819
|
GSE59873 |
| Dataset ID | Tissue / organ | Experiment type | Sample description | Source dataset ID | Project ID | |
|---|---|---|---|---|---|---|
| GSE59873 (18 somite, T to H) | embryo | baseline | 18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head | GSM1448820
|
GSE59873 |
| Dataset ID | Tissue / organ | Experiment type | Sample description | Source dataset ID | Project ID | |
|---|---|---|---|---|---|---|
| GSE128350 (1.67dpf whole embryo replicate1) | embryo | baseline | late embryo, 1.67dpf, whole embryo, untreatment | GSM3672145
|
GSE128350 | |
| GSE128350 (1.17dpf whole embryo replicate1) | embryo | baseline | late embryo, 1.17dpf, whole embryo, untreatment | GSM3672146
|
GSE128350 | |
| GSE128350 (1.17dpf whole embryo replicate2) | embryo | baseline | late embryo, 1.17dpf, whole embryo, untreatment | GSM3672147
|
GSE128350 | |
| GSE128350 (1.17dpf trunk) | embryo | baseline | late embryo, 1.17dpf, trunk, untreatment | GSM3672148
|
GSE128350 | |
| GSE128350 (1.67dpf whole embryo replicate2) | embryo | baseline | late embryo, 1.67dpf, whole embryo, untreatment | GSM3672157
|
GSE128350 | |
| GSE128350 (1.17dpf whole embryo replicate3) | embryo | baseline | late embryo, 1.17dpf, whole embryo, untreatment | GSM3672158
|
GSE128350 |