Fish Spatial Expression Database

GENE ID: ENSDARG00000014402

Symbol	Location	Gene type	Genome version	Species
smc1b	25: 16554817 ~ 16581233 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000014402 (smc1b), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000033757	ncaph2	4: 18441988 ~ 18455497 (+)
ENSDARG00000011783	stag2a	5: 23488055 ~ 23517747 (-)
ENSDARG00000061468	ncaph	5: 28259655 ~ 28270945 (+)
ENSDARG00000035388	tmem174	5: 35105085 ~ 35108893 (-)
ENSDARG00000067669	zglp1	6: 153146 ~ 158614 (+)
ENSDARG00000078329	rec8a	2: 6212205 ~ 6232517 (-)
ENSDARG00000005058	ncapd2	2: 44749201 ~ 44777679 (-)
ENSDARG00000061205	stag1a	2: 25019387 ~ 25108587 (+)
ENSDARG00000017744	smc2	1: 19535120 ~ 19561801 (+)
ENSDARG00000055022	pds5a	1: 23323002 ~ 23370618 (-)
ENSDARG00000074225	si:ch211-269e2.1	9: 34433053 ~ 34482698 (+)
ENSDARG00000040254	hormad1	16: 29551023 ~ 29557338 (-)
ENSDARG00000006092	rad21a	16: 48409066 ~ 48430272 (-)
ENSDARG00000070430	chtopb	16: 28881235 ~ 28887159 (+)
ENSDARG00000079274	prss59.1	16: 26012569 ~ 26013851 (+)
ENSDARG00000053668	stag2b	14: 28486213 ~ 28527422 (+)
ENSDARG00000075883	bub3	12: 49146715 ~ 49151326 (-)
ENSDARG00000038882	smc4	15: 1534644 ~ 1573129 (+)
ENSDARG00000055739	ribc1	23: 28685266 ~ 28692581 (-)
ENSDARG00000088950	sycp2	23: 12198242 ~ 12228363 (+)
ENSDARG00000061052	nipblb	10: 36475860 ~ 36547128 (-)
ENSDARG00000069260	rec8b	24: 12690163 ~ 12734583 (+)
ENSDARG00000062137	stag1b	24: 26948712 ~ 26995164 (-)
ENSDARG00000019000	smc3	22: 29858535 ~ 29906764 (-)
ENSDARG00000014402	smc1b	25: 16554817 ~ 16581233 (-)
ENSDARG00000013015	NA	--
ENSDARG00000061312	NA	--
ENSDARG00000075378	NA	--
ENSDARG00000076551	NA	--
ENSDARG00000086515	NA	--
ENSDARG00000076794	NA	--
ENSDARG00000086049	NA	--
ENSDARG00000090187	NA	--
ENSDARG00000093281	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate2)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812176	GSE158849
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000014402

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.